View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18597_high_29 (Length: 238)

Name: NF18597_high_29
Description: NF18597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18597_high_29
NF18597_high_29
[»] chr5 (11 HSPs)
chr5 (1-221)||(39487222-39487442)
chr5 (1-206)||(39463768-39463973)
chr5 (1-204)||(39469973-39470175)
chr5 (1-209)||(39476269-39476477)
chr5 (13-209)||(39451769-39451965)
chr5 (1-221)||(39457491-39457711)
chr5 (1-209)||(39484020-39484228)
chr5 (3-221)||(39461009-39461230)
chr5 (4-221)||(39472790-39473007)
chr5 (22-210)||(43311737-43311925)
chr5 (3-206)||(39455386-39455590)


Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 39487222 - 39487442
Alignment:
Q  1 ccttcctcggtagttttcctctgcttcgggagcaggggctctttcgatgaggatcaggttaaagagattgcacatgctattgagaattgtggagcccgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39487222 ccttcctcggtagttttcctctgcttcgggagcaggggctctttcgatgaggatcaggttaaagagattgcacatgctattgagaattgtggagcccgtt 39487321  T
Q  101 ttgtgtggtctctgcgtaaaccctcaccgaagggaatcatggtttcaccctctgattaccctctttctgatttggaatcggttttacctgaaggattctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39487322 ttgtgtggtctctgcgtaaaccctcaccgaagggaatcatggtttcaccctctgattaccctctttctgatttggaatcggttttacctgaaggattctt 39487421  T
Q  201 agatcgaacaacagggattgg 221  Q
    |||||||||||||||||||||    
T  39487422 agatcgaacaacagggattgg 39487442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 39463973 - 39463768
Alignment:
Q  1 ccttcctcggtagttttcctctgcttcgggagcaggggctctttcgatgaggatcaggttaaagagattgcacatgctattgagaattgtggagcccgtt 100  Q
    |||||||| |||||||||||||||||||||||||| || ||||||||||| ||||||||||| |||||||||| ||||||||||||| |||| || || |    
T  39463973 ccttcctcagtagttttcctctgcttcgggagcagaggttctttcgatgaagatcaggttaaggagattgcacttgctattgagaatagtggggctcgct 39463874  T
Q  101 ttgtgtggtctctgcgtaaaccctcaccgaagggaatcatggtttcaccctctgattaccctctttctgatttggaatcggttttacctgaaggattctt 200  Q
    |||| |||||||| ||||||||| |||| |||||   |||| || | || ||||||||||||||||||||||| |  || |||||||| |||||||||||    
T  39463873 ttgtttggtctctacgtaaacccccaccaaagggcgccatgattgcgccatctgattaccctctttctgatttaggttccgttttacccgaaggattctt 39463774  T
Q  201 agatcg 206  Q
    | ||||    
T  39463773 atatcg 39463768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 39470175 - 39469973
Alignment:
Q  1 ccttcctcggtagttttcctctgcttcgggagcaggggctctttcgatgaggatcaggttaaagagattgcacatgctattgagaattgtggagcccgtt 100  Q
    |||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||| | ||| |||| |||| | ||||||  ||| | ||||     
T  39470175 ccttcctcggtagttttcctctgcttcgggagcagggttt-tttcgatgaggatcaggttaaggggatcgcacttgctgtagagaatactggggtccgta 39470077  T
Q  101 ttgtgtggtctctgcgtaaaccctcaccgaagggaatcatggtttcaccctctgattaccctctttctgatttggaatcggttttacctgaaggattctt 200  Q
    ||||||||||||| ||||||||  |||| ||||| | ||||||| | || ||||||||||||||||||||||||   ||||||||||| |||||||||||    
T  39470076 ttgtgtggtctctacgtaaaccaccacctaagggcaccatggttgcgccatctgattaccctctttctgatttgagttcggttttaccagaaggattctt 39469977  T
Q  201 agat 204  Q
    ||||    
T  39469976 agat 39469973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 39476269 - 39476477
Alignment:
Q  1 ccttcctcggtagttttcctctgcttcgggagcaggggctctttcgatgaggatcaggttaaagagattgcacatgctattgagaattgtggagcccgtt 100  Q
    |||||||| ||||||||||||||||||||||| ||||| | ||| ||||| ||||||||||| ||||| ||||||||| |||||||| |||| || || |    
T  39476269 ccttcctccgtagttttcctctgcttcgggagtaggggttattttgatgaagatcaggttaaggagatcgcacatgctgttgagaatagtggggcacgct 39476368  T
Q  101 ttgtgtggtctctgcgtaaaccctcaccgaagggaatcatggtttcaccctctgattaccctctttctgatttggaatcggttttacctgaaggattctt 200  Q
    | ||||||||||||||||||||  || | ||||| |  |||| | ||||||| ||||||||||||| ||||||||    |||||||||||||||||||||    
T  39476369 tcgtgtggtctctgcgtaaacctccagcaaagggcactatggctgcaccctcggattaccctctttatgatttgggtctggttttacctgaaggattctt 39476468  T
Q  201 agatcgaac 209  Q
    |||| ||||    
T  39476469 agatagaac 39476477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 13 - 209
Target Start/End: Original strand, 39451769 - 39451965
Alignment:
Q  13 gttttcctctgcttcgggagcaggggctctttcgatgaggatcaggttaaagagattgcacatgctattgagaattgtggagcccgttttgtgtggtctc 112  Q
    |||||||||||||| ||||||||||| | |||||||||||| |||||||| ||||| |||||||||||||||||| |||| ||||  || || |||||||    
T  39451769 gttttcctctgctttgggagcaggggttgtttcgatgaggaccaggttaaggagatcgcacatgctattgagaatagtggggcccacttcgtatggtctc 39451868  T
Q  113 tgcgtaaaccctcaccgaagggaatcatggtttcaccctctgattaccctctttctgatttggaatcggttttacctgaaggattcttagatcgaac 209  Q
    | ||||||||  |||| |||||   ||||| | |||| ||||||||| ||||||||||| ||   ||||||||||| ||||||||||||||||||||    
T  39451869 tccgtaaaccagcaccaaagggcgccatggctgcaccttctgattacactctttctgatctgtgttcggttttaccagaaggattcttagatcgaac 39451965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 39457711 - 39457491
Alignment:
Q  1 ccttcctcggtagttttcctctgcttcgggagcaggggctctttcgatgaggatcaggttaaagagattgcacatgctattgagaattgtggagcccgtt 100  Q
    |||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||| || | |||| | ||||||  ||| | ||| |    
T  39457711 ccttcctcggaagttttcctctgcttcgggagcagggggtttttcgatgaggatcaggttaaggagatcgcccttgctgtagagaatactggggtccgat 39457612  T
Q  101 ttgtgtggtctctgcgtaaaccctcaccgaagggaatcatggtttcaccctctgattaccctctttctgatttggaatcggttttacctgaaggattctt 200  Q
    ||||||||||||| ||||||||  |||||||||  | ||||  | | || ||||||||| ||||||||||||||   ||||||||||| |||||||||||    
T  39457611 ttgtgtggtctctacgtaaaccaccaccgaaggacaccatgaatgcgccatctgattacactctttctgatttgagttcggttttaccagaaggattctt 39457512  T
Q  201 agatcgaacaacagggattgg 221  Q
    |||| | ||| ||| ||||||    
T  39457511 agataggacagcagagattgg 39457491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 39484020 - 39484228
Alignment:
Q  1 ccttcctcggtagttttcctctgcttcgggagcaggggctctttcgatgaggatcaggttaaagagattgcacatgctattgagaattgtggagcccgtt 100  Q
    |||||||| ||||||||||||||||| ||||| ||||| | ||| ||||| ||||||||||| ||||| ||||||| | |||||||| |||| || || |    
T  39484020 ccttcctccgtagttttcctctgctttgggagtaggggttattttgatgaagatcaggttaaggagatcgcacatgttgttgagaatagtggggcacgct 39484119  T
Q  101 ttgtgtggtctctgcgtaaaccctcaccgaagggaatcatggtttcaccctctgattaccctctttctgatttggaatcggttttacctgaaggattctt 200  Q
    | ||||||||||||||||||||   |   ||||| | ||||| | |||||||||||||| |||||| ||||||||   ||||||||||||||||||||||    
T  39484120 tcgtgtggtctctgcgtaaacctctagtaaagggcaccatggctgcaccctctgattactctctttatgatttgggtccggttttacctgaaggattctt 39484219  T
Q  201 agatcgaac 209  Q
    |||||||||    
T  39484220 agatcgaac 39484228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 221
Target Start/End: Original strand, 39461009 - 39461230
Alignment:
Q  3 ttcctcggtagttttcctctgcttcgggagcaggggctctttcgatgaggatcaggttaaagagattgcacatgctattgagaattgtggagcccgtttt 102  Q
    |||||| ||||||||||||||||| ||||  |||||  | ||||||||||||||| |||| ||||| |||||||| |||||| || |||| | || |||     
T  39461009 ttcctccgtagttttcctctgctttgggactaggggtaccttcgatgaggatcagattaaggagatcgcacatgccattgaggatagtggcgtccatttc 39461108  T
Q  103 gtgtggtctctgcgtaaaccctcaccgaagggaat---catggtttcaccctctgattaccctctttctgatttggaatcggttttacctgaaggattct 199  Q
     | |||||||| |||||||||  |||||||||  |   ||||||| |||||||||||||| ||||| |||| ||||  | ||||||||| ||||| ||||    
T  39461109 atatggtctcttcgtaaacccaaaccgaagggtgtcgccatggttgcaccctctgattactctcttactgaattgggcttggttttacccgaagggttct 39461208  T
Q  200 tagatcgaacaacagggattgg 221  Q
    ||||||| ||| ||||||||||    
T  39461209 tagatcggacagcagggattgg 39461230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 39472790 - 39473007
Alignment:
Q  4 tcctcggtagttttcctctgcttcgggagcaggggctctttcgatgaggatcaggttaaagagattgcacatgctattgagaattgtggagcccgttttg 103  Q
    ||||| |||||||||||||||||||| || | ||| |||||||| |||||||||||||   ||||||||   |||||||||||| |||| ||||| ||      
T  39472790 tcctcagtagttttcctctgcttcggaagtatgggttctttcgacgaggatcaggttacgcagattgcatgcgctattgagaatagtggggcccggttca 39472889  T
Q  104 tgtggtctctgcgtaaaccctcaccgaagggaatcatggtttcaccctctgattaccctctttctgatttggaatcggttttacctgaaggattcttaga 203  Q
    | |||||||| ||||||||  ||||| |||| | |||||  || ||||||||||||||||||| ||||||||  ||   |||||| |||||||| |||||    
T  39472890 tatggtctcttcgtaaacctccaccggagggcaccatggcctcgccctctgattaccctctttttgatttgggttcaagtttacccgaaggatttttaga 39472989  T
Q  204 tcgaacaacagggattgg 221  Q
     || ||| ||| ||||||    
T  39472990 gcggacagcagagattgg 39473007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 210
Target Start/End: Complemental strand, 43311925 - 43311737
Alignment:
Q  22 tgcttcgggagcaggggctctttcgatgaggatcaggttaaagagattgcacatgctattgagaattgtggagcccgttttgtgtggtctctgcgtaaac 121  Q
    ||||| ||||||| ||| |||||||||||||||||  |||  ||||||||  |||||||||||||  |||  || || ||  ||||||||||||| ||||    
T  43311925 tgctttgggagcaagggttctttcgatgaggatcaaattagggagattgcgtatgctattgagaaaagtgaggctcgcttcctgtggtctctgcgaaaac 43311826  T
Q  122 cctcaccgaagggaatcatggtttcaccctctgattaccctctttctgatttggaatcggttttacctgaaggattcttagatcgaaca 210  Q
    || |||||||||||| ||||| |    | ||||||||| |||||||||||||||   | |||||||||||||| |||||||||||||||    
T  43311825 ccccaccgaagggaaccatgggtgagacatctgattactctctttctgatttggtcgcagttttacctgaagggttcttagatcgaaca 43311737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 206
Target Start/End: Original strand, 39455386 - 39455590
Alignment:
Q  3 ttcctcggtagttttcctctgcttcgggagcaggggctctttcgatgaggatcaggttaaagagattgcacatgctattgagaattgtggagcccgtttt 102  Q
    |||||| || |||||||| |||||||| ||||  || | ||| ||||||||||||||||| ||||| |||  ||||||||||||| ||    |||  ||     
T  39455386 ttcctccgtcgttttcctttgcttcggaagcaaaggttgttttgatgaggatcaggttaaggagatcgcatgtgctattgagaatagtaagtcccacttc 39455485  T
Q  103 gtgtggtctctgcgtaaaccctcaccgaa-gggaatcatggtttcaccctctgattaccctctttctgatttggaatcggttttacctgaaggattctta 201  Q
     | |||||||| ||||||||   |||||| |||   || || | |||| ||||||||| ||||||||||||||   ||| ||||||| ||||||||||||    
T  39455486 atatggtctctccgtaaacctgtaccgaaggggcgccagggctgcaccttctgattacactctttctgatttgtgttcgattttacccgaaggattctta 39455585  T
Q  202 gatcg 206  Q
    |||||    
T  39455586 gatcg 39455590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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