View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18597_high_5 (Length: 477)
Name: NF18597_high_5
Description: NF18597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18597_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 13 - 462
Target Start/End: Original strand, 28717745 - 28718195
Alignment:
| Q |
13 |
aatatcaagaagaatggtgaaagcaattgagttgtttaggccttcaggacatagaattataagcaattcaactttattcaattgaggatgtagggaaata |
112 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
28717745 |
aatatcaaaaagaatggtgaaagcaattgagttgtttaggccttcaggacatagaattataagcaattgaactttattcaattgaggatttagggaaata |
28717844 |
T |
|
| Q |
113 |
ctagatgtcaacggatctagtaattattttattcaattggcaatttaacgtgggataattagaattgagacttatttcaaaagattggttctacatgatt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
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| T |
28717845 |
ctagatgtcaacggatctagtaattattttattcaattggcaatttaatgtgggataattggaattgagacttatttcaaaagattagttctacatgatt |
28717944 |
T |
|
| Q |
213 |
tataaatttcacatgtccagttaggttgttccatgatccataggaaggttaatttgttaacttttatgtaataaatattgatattgtaaaataactttga |
312 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
28717945 |
tacaaatttcacatgtccagttaggttgttccatgatccataggaaggttaatctgttaactttaatgtaataaatattgatattgtaaaataactttga |
28718044 |
T |
|
| Q |
313 |
tctaatgtggctattatgcacaaaacatacttcaaagtatattgaattggcaaaatttagtagttttagaagttaccacaagatgtgacatagtgagttg |
412 |
Q |
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|||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28718045 |
tctaatgtggttgttatgcacaaaacatatttcaaagtatattgaattggcaaaatttagtagttttagaagttaccacaagatgtgacatagtgagttg |
28718144 |
T |
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| Q |
413 |
cttatttatgtctt-atacataaatttaatgtagtacgtatgattaaaatg |
462 |
Q |
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|||||||| ||||| |||||||| ||||||||||||| ||||||||||||| |
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| T |
28718145 |
cttatttacgtcttaatacataattttaatgtagtacatatgattaaaatg |
28718195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 13 - 187
Target Start/End: Original strand, 20431912 - 20432086
Alignment:
| Q |
13 |
aatatcaagaagaatggtgaaagcaattgagttgtttaggccttcaggacatagaattataagcaattcaactttattcaattgaggatgtagggaaata |
112 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||| || |||||||||| ||||||||||| ||||||| |||||||||||| ||| |||| ||||| |
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| T |
20431912 |
aatatcaataagaatggtgaaagcaattgagctgtttgggtcttcaggacagagaattataagtaattcaattttattcaattggagatttaggaaaata |
20432011 |
T |
|
| Q |
113 |
ctagatgtcaacggatctagtaattattttattcaattggcaatttaacgtgggataattagaattgagacttat |
187 |
Q |
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||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||| | |||||||| ||||| |
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| T |
20432012 |
ctagatgtcaacgaatctagtatttattttattcaattggcaatttaacgtgagataaatggaattgaggcttat |
20432086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 45818526 - 45818352
Alignment:
| Q |
13 |
aatatcaagaagaatggtgaaagcaattgagttgtttaggccttcaggacatagaattataagcaattcaactttattcaattgaggatgtagggaaata |
112 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||| || |||||||||| ||||||||||| ||||||| |||||||||||| ||| |||| ||||| |
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| T |
45818526 |
aatatcaataagaatggtgaaagcaattgagctgtttgggtcttcaggacagagaattataagtaattcaattttattcaattggagatttaggaaaata |
45818427 |
T |
|
| Q |
113 |
ctagatgtcaacggatctagtaattattttattcaattggcaatttaacgtgggataattagaattgagacttat |
187 |
Q |
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||||||||||| | |||||||| ||||||||||||||||||||||||||||| ||||| | |||||||| ||||| |
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| T |
45818426 |
ctagatgtcaatgaatctagtatttattttattcaattggcaatttaacgtgagataaatggaattgaggcttat |
45818352 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 1e-48; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 40872358 - 40872528
Alignment:
| Q |
17 |
tcaagaagaatggtgaaagcaattgagttgtttaggccttcaggacatagaattataagcaattcaactttattcaattgaggatgtagggaaatactag |
116 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||| || |||||||||| ||||||||||| ||||||| |||||||||||| ||| |||| ||||||||| |
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| T |
40872358 |
tcaataagaatggtgaaagcaattgagctgtttgggtcttcaggacagagaattataagtaattcaattttattcaattggagatttaggaaaatactag |
40872457 |
T |
|
| Q |
117 |
atgtcaacggatctagtaattattttattcaattggcaatttaacgtgggataattagaattgagacttat |
187 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||||||||| | ||||| | |||||||| ||||| |
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| T |
40872458 |
atgtcaacgaatctagtatttattttattcaattggcaatttaacgcgagataaatggaattgaggcttat |
40872528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 5737298 - 5737395
Alignment:
| Q |
17 |
tcaagaagaatggtgaaagcaattgagttgtttaggccttca----ggacatagaattataagcaattcaactttattcaattgaggatgtagggaaa |
110 |
Q |
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|||||||||||||| |||||||||||||| |||||| ||| | ||| | | ||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
5737298 |
tcaagaagaatggttaaagcaattgagttatttaggtctttaattaggatagacgattataagcaattcaactttattcaattggggatttagggaaa |
5737395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 5774410 - 5774507
Alignment:
| Q |
17 |
tcaagaagaatggtgaaagcaattgagttgtttaggccttca----ggacatagaattataagcaattcaactttattcaattgaggatgtagggaaa |
110 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||| ||| | ||| | | ||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
5774410 |
tcaagaagaatggttaaagcaattgagttatttaggtctttaattaggatagacgattataagcaattcaactttattcaattggggatttagggaaa |
5774507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 95
Target Start/End: Complemental strand, 20213320 - 20213234
Alignment:
| Q |
13 |
aatatcaagaagaatggtgaaagcaattgagttgtttag----gccttcaggacatagaattataagcaattcaactttattcaatt |
95 |
Q |
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|||||| | |||||||||||||||||||||| ||||| | | |||||||||| ||||||||||| ||||||| ||||||||||| |
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| T |
20213320 |
aatatcgataagaatggtgaaagcaattgagctgtttgggtctgtcttcaggacagagaattataagtaattcaattttattcaatt |
20213234 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 9197608 - 9197430
Alignment:
| Q |
13 |
aatatcaagaagaatggtgaaagcaattgagttgtttag----gccttcaggacatagaattataagcaattcaactttattcaattgaggatgtaggga |
108 |
Q |
| |
|
|||||| | |||||||||||||||||||||| ||||| | | |||||||||| ||||||||||| ||||||| |||||||||||| ||| |||| | |
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|
| T |
9197608 |
aatatcgataagaatggtgaaagcaattgagctgtttgggtctgtcttcaggacagagaattataagtaattcaattttattcaattggagatttaggaa |
9197509 |
T |
|
| Q |
109 |
aatactagatgtcaacggatctagtaattattttattcaattggcaatttaacgtgggataattagaattgagacttat |
187 |
Q |
| |
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||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||| | |||||||| ||||| |
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| T |
9197508 |
aatactagatgtcaacgaatctagtatttattttattcaattggcaatttaacgtgagataaatggaattgaggcttat |
9197430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 9753557 - 9753643
Alignment:
| Q |
22 |
aagaatggtgaaagcaattgagttgtttaggccttcaggacatagaattataagcaattcaactttattcaattgaggatgtagggaaatac |
113 |
Q |
| |
|
|||| ||||||||| |||| || |||||||| |||||| |||||||||||||||| ||||||||||||||| |||| ||||||||||| |
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| T |
9753557 |
aagattggtgaaagtaattcagctgtttaggacttcag-----agaattataagcaattaaactttattcaattggggatttagggaaatac |
9753643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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