View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18597_high_8 (Length: 429)
Name: NF18597_high_8
Description: NF18597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18597_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 5 - 378
Target Start/End: Complemental strand, 42640018 - 42639645
Alignment:
| Q |
5 |
tgtttgtattaatacctttatgtttaactttttcccattttctgttcagaactatagcaatatttgctgcattatgtgtctattatatagaagggcgctc |
104 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
42640018 |
tgtttgtattaatacctttatgtttaattttttcctattttctgtttagaactatagcaatatttgctgcattatatgtctattatatagaagggcgctc |
42639919 |
T |
|
| Q |
105 |
gagaagtgtgacaacttagcagttctattgctttcttcgaactgcaaaacaaaatcnnnnnnnnnnnnnacccccaaaaatatttttgtattaagcaata |
204 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| ||| || ||||||||||| | ||| |||||||||||| |||||||||||| |
|
|
| T |
42639918 |
gagaagtgtgacaacttagcagttctgttgctttcttggaagtgtaaaacaaaatctttttctttttttatcccgaaaaatatttttctattaagcaata |
42639819 |
T |
|
| Q |
205 |
taaaggataaaggacttcagaaatgccattagttggactttggcttgttcagtattttaggaagatatgtgatatattgatctgaaaattattgaattga |
304 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
42639818 |
taaaggataaaggacttaagagatgccattagttggactttggcttgttccacatattaggaagatatgtgatatattgatctgataattattgaattga |
42639719 |
T |
|
| Q |
305 |
aggtgagactggatatctatagttttcccatggccataaatccgacggttttatgacctatgaaggattaagga |
378 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||| |
|
|
| T |
42639718 |
aggtgacactggatatctatagttttcccatggccataaatcagtcggttttatgacctatgaaggatttagga |
42639645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 66 - 352
Target Start/End: Original strand, 42565977 - 42566263
Alignment:
| Q |
66 |
atttgctgcattatgtgtctattatatagaagggcgctcgagaagtgtgacaacttagcagttctattgctttcttcgaactgcaaaacaaaatcnnnnn |
165 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42565977 |
atttgctgcattatgtgtctattatatagaagggcgcttgagaagtgtgacaacttagcagttctattgctttcttcgaactgcaaaacaaaatcttttt |
42566076 |
T |
|
| Q |
166 |
nnnnnnnnacccccaaaaatatttttgtattaagcaatataaaggataaaggacttcagaaatgccattagttggactttggcttgttcagtattttagg |
265 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
42566077 |
ctttttttatccccaaaaatatttttgtattaagcaatataaaggataaaggacttcagaaatgccattagttggactttagcttgttccgtattttagg |
42566176 |
T |
|
| Q |
266 |
aagatatgtgatatattgatctgaaaattattgaattgaaggtgagactggatatctatagttttcccatggccataaatccgacgg |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42566177 |
aagatatgtgatatattgatctgaaaattattgaattgaaggtgagactggatatctatagttttcccatggccataaatccgacgg |
42566263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 42565937 - 42565980
Alignment:
| Q |
1 |
tttatgtttgtattaatacctttatgtttaactttttcccattt |
44 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42565937 |
tttatgtttgtattaatacctttatgtttaactttttcccattt |
42565980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University