View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18597_low_1 (Length: 770)
Name: NF18597_low_1
Description: NF18597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18597_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 687; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 687; E-Value: 0
Query Start/End: Original strand, 20 - 750
Target Start/End: Original strand, 3879675 - 3880410
Alignment:
| Q |
20 |
ctctgtacttcaccggatcaatatcacttcaaattcacttcaagtatgtgttatacacttatacttatgtcttgtttcattccccattctcatatattct |
119 |
Q |
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| T |
3879675 |
ctctgtacttcaccggatcaatatcacttcaaattcacttcaagtatgtgttatacacttatacttatgtcttgtttcattccccattctcatatattct |
3879774 |
T |
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| Q |
120 |
agagtatatgcagaaattagcactgcaaaaacaggatagcttaacttcattagcattgcaatgccaatctttccaataagtggatctc--tgagtgtgaa |
217 |
Q |
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| T |
3879775 |
agagtatatgcagacattagcactgcaaaagcaggatagcttaacttcattagcattgcaatgccaatctttccaagaagtggatctctctgagtgtgaa |
3879874 |
T |
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| Q |
218 |
tctttgacaaattctatatgtggtgtttttggtgatggtggaggatgtcctatgttgaaatcactagttctggattattgtgaggtacatgaacaaatat |
317 |
Q |
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| T |
3879875 |
tctttgacaaattctatatgtgatgtttttggtgatggtggaggatgtcctatgttgaaatcactagttctggattattgtgaggtacatgaacaaatat |
3879974 |
T |
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| Q |
318 |
ttcttttgaatttctggatttattttccaaaatttgattattcatgagctatgttagtatagtagtatattctgacaattcaaataagtgttttcctact |
417 |
Q |
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| T |
3879975 |
ttcttttgaatttctggatttattttccaaaatttgattattcatgagctatgttagtatagtagtatattctgacaattcaaataagtgttttcctact |
3880074 |
T |
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| Q |
418 |
cttgatcccttttacacaattctaattgttttttatataatcaactaatccagctgtaccataacttattgattgaagttttgcgtgtgatttttataat |
517 |
Q |
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| T |
3880075 |
cttgatcccttttacacaattctaattgttttttatataatcaactaatccagctgtaccataacttattgattgaagttttgcttgtgatttttataat |
3880174 |
T |
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| Q |
518 |
actgatgtac---ttttgtatgtcatattgatgaagtttatgaaagggtattcttggtattctcacaaaatcagtttaaagaattactgaaatttgtgac |
614 |
Q |
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| T |
3880175 |
actgatgtactttttttgtatgtcatattgatgaagtttatgaaagggtattcttggtattctcacaaaatcagtttaaagaactactgaaatttgtgac |
3880274 |
T |
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| Q |
615 |
tttagttgaaataattgcatgaatcattattagttgttactatcagtgtttagcggtagatgatccttgggataatgtctcaacttttctggctgttgta |
714 |
Q |
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| T |
3880275 |
tttagttgaaataattgcatgaatcattattagttgttactatcagtgtttagcggtagatgatccttgggataatgtctcaacttttctggctgttgta |
3880374 |
T |
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| Q |
715 |
tctgtgagagattaggtttcttttcattcctgggat |
750 |
Q |
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| T |
3880375 |
tctgtgagagattaggtttcttttcattcctgggat |
3880410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 126 - 310
Target Start/End: Original strand, 3865805 - 3865991
Alignment:
| Q |
126 |
tatgcagaaattagcactgcaaaaacaggatagcttaacttcattagcattgcaatgccaatctttccaataagtgga--tctctgagtgtgaatctttg |
223 |
Q |
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| T |
3865805 |
tatgcagaaattagcactgcaaaagcaggatagcttaactacattagcgctgcaatgccaatctttacaagaagtggacctctctgagtgtgaatcattg |
3865904 |
T |
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| Q |
224 |
acaaattctatatgtggtgtttttggtgatggtggaggatgtcctatgttgaaatcactagttctggattattgtgaggtacatgaa |
310 |
Q |
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| T |
3865905 |
acaaacactgtatgtgatgtttttagtgacggtggaggatgtcccatgttgaaatcactagttcttgataattgtgaggtacatgaa |
3865991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 3865684 - 3865732
Alignment:
| Q |
20 |
ctctgtacttcaccggatcaatatcacttcaaattcacttcaagtatgt |
68 |
Q |
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| T |
3865684 |
ctctgtactccaccggatcaatatcacttcaaattcacttcaagtatgt |
3865732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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