View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18597_low_14 (Length: 427)
Name: NF18597_low_14
Description: NF18597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18597_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 1323981 - 1323573
Alignment:
| Q |
1 |
aagaatataatactttaaatgcgaaccagtacgcacataccaattcaagcttcgcaacatatcaaataaattatgtgactataaataagatgactctaga |
100 |
Q |
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| T |
1323981 |
aagaatagaatactttaaatgtgaaccagtacgcacataccaattcatggttcgcaacatatcaaataaattatgtgactataaataagatgactctaga |
1323882 |
T |
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| Q |
101 |
atagaatactttaaatgcgaaccaatacgcacatatcaattcatagttcgcaacatatcaaatgaattatgtgactataaataaaatgactttggaataa |
200 |
Q |
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| T |
1323881 |
atagaatactttaaatgtgaaccaatacgcatatatcaattcatagttcgcaacatatcaaatgaattatgtgactataaataagatgactctggaataa |
1323782 |
T |
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| Q |
201 |
actactttaaagttttgaattttgaataaagatacgatcctctaactctcctcatgacccgataaatgatactaacaaga-taatgtatgtttaatgtaa |
299 |
Q |
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| T |
1323781 |
aatactttaaagttttgaattttgaataaagatatgatcatctaactctcctcatgacccgataaa-gatacacacactattgatgtatgtttaatgtaa |
1323683 |
T |
|
| Q |
300 |
ga-nnnnnnnnnatgaatatgtttaatgtaagattgtgatattacttttaaacaatgatgcaacaaaataattgaacacaacacaatagcttctaattat |
398 |
Q |
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| T |
1323682 |
gattttttttttatgaatatgtttaatgtaagattgtgatattacttttaaacaatgatgcaacaaaataattgaacacaacacaatagcttctaattat |
1323583 |
T |
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| Q |
399 |
tgagttcaat |
408 |
Q |
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| T |
1323582 |
tgagttcaat |
1323573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 20 - 211
Target Start/End: Complemental strand, 1324058 - 1323867
Alignment:
| Q |
20 |
tgcgaaccagtacgcacataccaattcaagcttcgcaacatatcaaataaattatgtgactataaataagatgactctagaatagaatactttaaatgcg |
119 |
Q |
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| T |
1324058 |
tgcgaacgggtacacacataccaattcatggtttgcaacatatcaaatgaattatgtgactataaataagatgactcaagaatagaatactttaaatgtg |
1323959 |
T |
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| Q |
120 |
aaccaatacgcacatatcaattcatagttcgcaacatatcaaatgaattatgtgactataaataaaatgactttggaataaactactttaaa |
211 |
Q |
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| T |
1323958 |
aaccagtacgcacataccaattcatggttcgcaacatatcaaataaattatgtgactataaataagatgactctagaatagaatactttaaa |
1323867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 178
Target Start/End: Complemental strand, 18114397 - 18114353
Alignment:
| Q |
134 |
tatcaattcatagttcgcaacatatcaaatgaattatgtgactat |
178 |
Q |
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| T |
18114397 |
tatcaattcacagttcgcagcatatcaagagaattatgtgactat |
18114353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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