View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18597_low_2 (Length: 617)
Name: NF18597_low_2
Description: NF18597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18597_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 43 - 596
Target Start/End: Original strand, 812359 - 812910
Alignment:
| Q |
43 |
aaagtgaaatgaatataaaatgaaatgaaatattagtttatatcacaaactaagagaatccgcaatgaatttggagttggtgcattaacttgtgtggcac |
142 |
Q |
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| T |
812359 |
aaagtgaaatgaatataaaatgaaatgaaatagt--tttatttcacaaactaagagaatccacaatgaatttggagttggtgcattaacttgtgtggcac |
812456 |
T |
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| Q |
143 |
atttactactctcaactgtccgatttggtttaacggctgagatcatacagcttcactaaaactgatgtgtaatcttaacagtctaatctcaaattatcga |
242 |
Q |
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| T |
812457 |
atttacttctctcaactgtccgatttggtttaacggctgagatcatacagcttcactaaaattgatgtgtaatcttaacagtctaatctcaaattatcga |
812556 |
T |
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| Q |
243 |
ttaaagttaattacaatgtaaagtagtttggaactctacatcacatcacacatagccctatatatcctgagcactcttgctagtggaatattattatctt |
342 |
Q |
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| T |
812557 |
ttaaaattaattacaatgtaaagtagtttggaactctacatcaca-catagaactatatatatatcctgagcactcttgctagtggaatattattatctt |
812655 |
T |
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| Q |
343 |
agctggtttgtgcatccaagcaagctcttccgttgcaactaaagggctgctacttattaagaagcacaattaattaaattttacatacatctcataatac |
442 |
Q |
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| T |
812656 |
agctggtttgtgcatccaaacaagctcttccgttgcaactaaagggctgctacttattaagaagcacaattaattaaattttacatacatctcataatac |
812755 |
T |
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| Q |
443 |
attttaaagcatgtctcatgaaaacaaaacaatacaatataataccccataagtacacnnnnnnncaaatttgaattactaagaaagtcaattataaaca |
542 |
Q |
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| T |
812756 |
attttaaagcatatctcatgaaaacaaaacaatacaatacaataccccataagtacacaaaaaaaaaaaattgaattactaagaaagtcaattataaaca |
812855 |
T |
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| Q |
543 |
atctctacacaaccgcaccaccccattaaatagtttcat-aagggggaaagggat |
596 |
Q |
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| T |
812856 |
atctctgcacaaccgcaccaccccattaaatagtttcatgaggggggaaagggat |
812910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 400 - 448
Target Start/End: Complemental strand, 14306516 - 14306468
Alignment:
| Q |
400 |
taagaagcacaattaattaaattttacatacatctcataatacatttta |
448 |
Q |
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| T |
14306516 |
taagaagcacaattgattaaatttcatatccatctcataatacatttta |
14306468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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