View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18597_low_22 (Length: 336)
Name: NF18597_low_22
Description: NF18597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18597_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 44374886 - 44375205
Alignment:
| Q |
1 |
agagttactaacccaagtgccatacgaactttaagctggactccatttgtaaagttgagaacataaacatcattgacaagtacaccaagagaagagtaat |
100 |
Q |
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| T |
44374886 |
agagttactaacccaagtgccatacgaactttaagctggactccatttgtaaagttgagaacataaacatcattgacaagtacaccaagagaagagtaat |
44374985 |
T |
|
| Q |
101 |
gatctgcatactcaacttcatagtcacattgatgctcgacttcacattcatagttatccgtctgatgcaccgatgcacaaaggggatgcctgcaggggac |
200 |
Q |
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| T |
44374986 |
gatctgcatactcaacttcatagtcacattgatgctcgacttcacattcatagttatccgtctgatgcaccgatgcacaaaggggatgcctgcaggggac |
44375085 |
T |
|
| Q |
201 |
caagtcattgctaggccggtaaagtggatgtggtgtctgaaaaataggcataagttattgaagattaattttgataggaaattttaatcaaacagattct |
300 |
Q |
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| T |
44375086 |
caagtcattgctaggccggtaaagtggatgtggtgtctgaaaaataggcataagttattgaagattaattttgataggaaattttaatcaaacagattct |
44375185 |
T |
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| Q |
301 |
acaggcataaatatatttat |
320 |
Q |
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||| |||||||||||||||| |
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| T |
44375186 |
acatgcataaatatatttat |
44375205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 7 - 133
Target Start/End: Original strand, 39497967 - 39498093
Alignment:
| Q |
7 |
actaacccaagtgccatacgaactttaagctggactccatttgtaaagttgagaacataaacatcattgacaagtacaccaagagaagagtaatgatctg |
106 |
Q |
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| T |
39497967 |
actaaccccagtgccattctaactttaagttggactccattggtgaagttgagaaggtagacatcatttagaagtacaccaagggttgagtattgatcag |
39498066 |
T |
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| Q |
107 |
catactcaacttcatagtcacattgat |
133 |
Q |
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| T |
39498067 |
catacttaatttcgtagtcacattgat |
39498093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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