View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18597_low_23 (Length: 331)
Name: NF18597_low_23
Description: NF18597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18597_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 2 - 312
Target Start/End: Complemental strand, 1323884 - 1323573
Alignment:
| Q |
2 |
agaatataatactttaaatgcgaaccagtacgcacataccaattcaagcttcgcaacatatcaaatgaattatgtgactataaataaaatgactttggaa |
101 |
Q |
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| T |
1323884 |
agaatagaatactttaaatgtgaaccaatacgcatatatcaattcatagttcgcaacatatcaaatgaattatgtgactataaataagatgactctggaa |
1323785 |
T |
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| Q |
102 |
taaactactttaaagttttgaattttgaataaagatacgatcctctaactctcctcatgacccgataaatgatactaacaaga-taatgtatgtttaatg |
200 |
Q |
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| T |
1323784 |
taaaatactttaaagttttgaattttgaataaagatatgatcatctaactctcctcatgacccgataaa-gatacacacactattgatgtatgtttaatg |
1323686 |
T |
|
| Q |
201 |
taaga-nnnnnnnnnatgaatatgtttaatgtaagattgtgatattacttttaaacaatgatgcaacaaaataattgaacacaacacaatagcttctaat |
299 |
Q |
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| T |
1323685 |
taagattttttttttatgaatatgtttaatgtaagattgtgatattacttttaaacaatgatgcaacaaaataattgaacacaacacaatagcttctaat |
1323586 |
T |
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| Q |
300 |
tattgagttcaat |
312 |
Q |
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| T |
1323585 |
tattgagttcaat |
1323573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 1323981 - 1323867
Alignment:
| Q |
1 |
aagaatataatactttaaatgcgaaccagtacgcacataccaattcaagcttcgcaacatatcaaatgaattatgtgactataaataaaatgactttgga |
100 |
Q |
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| T |
1323981 |
aagaatagaatactttaaatgtgaaccagtacgcacataccaattcatggttcgcaacatatcaaataaattatgtgactataaataagatgactctaga |
1323882 |
T |
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| Q |
101 |
ataaactactttaaa |
115 |
Q |
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||| | ||||||||| |
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| T |
1323881 |
atagaatactttaaa |
1323867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 1324058 - 1323983
Alignment:
| Q |
20 |
tgcgaaccagtacgcacataccaattcaagcttcgcaacatatcaaatgaattatgtgactataaataaaatgact |
95 |
Q |
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||||||| |||| |||||||||||||| | || ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1324058 |
tgcgaacgggtacacacataccaattcatggtttgcaacatatcaaatgaattatgtgactataaataagatgact |
1323983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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