View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18597_low_26 (Length: 290)
Name: NF18597_low_26
Description: NF18597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18597_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 46444888 - 46445161
Alignment:
| Q |
1 |
ccagaatcttgtcggtgataaaaaagagatcgacgtaactcaacttcaagcgcaggagcagaaacttattctagaaaggcttgttgatgtcgttgataat |
100 |
Q |
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| T |
46444888 |
ccagaatctcgtcggtgataaaaaagagatcgacgtaactcaacttcaatcgcaggagcagaaacttattctagaaaggcttgttgatgtcgttgataat |
46444987 |
T |
|
| Q |
101 |
gatcctcagagattcttccaccgtatgagaagccgattcgacgcgtaattataccttttccttcatcattccttttttattttcgcaaaatgtagagtac |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
46444988 |
gatcctgagagattcttccaccgtatgagaagccgattcgacgcgtaattataccttttccttcatcattcc-tttttattttcgcaatatgtagagtac |
46445086 |
T |
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| Q |
201 |
tacaacacacgattttcaagcaatcgcgttaattatgtgtttatcaaattggaaatggcgctacttgtgcttcat |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46445087 |
tacaacacacgattttcaagcaatcgcgttaattatgtgtttatcaaattggaaatggcgctacttgtgcttcat |
46445161 |
T |
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