View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18597_low_27 (Length: 280)
Name: NF18597_low_27
Description: NF18597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18597_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 13 - 170
Target Start/End: Complemental strand, 7816830 - 7816666
Alignment:
| Q |
13 |
aaaataacataagctagtaaaaaagtgttataaaacttgtaacatgaaattgtggtcaaacatgtctattttgatcatgcaaacttataaactataaact |
112 |
Q |
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| T |
7816830 |
aaaataacataagctagtaaaaaagtgttataaaacttgtaacaagaaattgtggtcaaacatgtctattttgatcatgcaaacttataaactataaact |
7816731 |
T |
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| Q |
113 |
taaaaattagtc-------ttgacaaacagtttcttagtacctgggcaagttacaatcatttggt |
170 |
Q |
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| T |
7816730 |
taaaaattagtcttgagtcttgacaaacagtttcttagtacctgggcaagttacaatcatttggt |
7816666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 168 - 263
Target Start/End: Complemental strand, 7808919 - 7808824
Alignment:
| Q |
168 |
ggtcttccattctcagaacacctaaatcctacatcaagaaagttgcaatcttttgatgcatacaatggataactttcatcccaaacccaatttcct |
263 |
Q |
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| T |
7808919 |
ggtcttccattctcagaacacctaaatcctaaatcaagaaacttgcaatcttttgattgatacaatggatacctttcatcccaaacccaatttcct |
7808824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 205 - 263
Target Start/End: Complemental strand, 7816619 - 7816561
Alignment:
| Q |
205 |
gaaagttgcaatcttttgatgcatacaatggataactttcatcccaaacccaatttcct |
263 |
Q |
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| T |
7816619 |
gaaagttgcaatcttttgatgcatacaatggataactttcatcccaaacccaatttcct |
7816561 |
T |
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