View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18597_low_3 (Length: 616)

Name: NF18597_low_3
Description: NF18597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18597_low_3
NF18597_low_3
[»] chr5 (13 HSPs)
chr5 (18-471)||(36492553-36493015)
chr5 (275-601)||(36493014-36493334)
chr5 (174-377)||(36475745-36475945)
chr5 (431-488)||(36476149-36476206)
chr5 (437-501)||(36468358-36468422)
chr5 (437-496)||(36445955-36446014)
chr5 (431-471)||(36435734-36435774)
chr5 (437-501)||(36436115-36436178)
chr5 (431-471)||(36445655-36445695)
chr5 (23-96)||(36445262-36445335)
chr5 (23-96)||(36467731-36467804)
chr5 (431-471)||(36468088-36468128)
chr5 (64-137)||(36475639-36475714)


Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 471
Target Start/End: Original strand, 36492553 - 36493015
Alignment:
Q  18 ataatacacattcaccattgcttgcaaaagctcatcaccatcacagatacatagattgatgcaaatttatacatgattttcactcctggaatatctttac 117  Q
    ||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36492553 ataatacacattcaccacttcttgcaaaagctcatccccatcacagatacatagattgatgcaaatttatacatgattttcactcctggaatatctttac 36492652  T
Q  118 tatatagtgacaaaatagatgacagcaactgagattgatgtctatctatgcatgccttttttgatcaactcacaaacattatttattcatgaaatttatt 217  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  36492653 tatatagtgacaagatagatgacagcaactgagattgatgtctatctatgcatgccattttttatcaactcacaaacattatttattcatgaaatttatt 36492752  T
Q  218 attaagaaagagtgcatcataacatgatcatagcattatgatcaattctgagttttgtcctcagcttgcacggcaacaaattcagcatgtgagcagcaat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36492753 attaagaaagagtgcatcataacatgatcatagcattatgatcaattctgagttttgtcctcagcttgcacggcaacaaattcagcatgtgagcagcaat 36492852  T
Q  318 ggccatggcaatagtaatggcaaccacctccaccatggtgagaaccacctccaccgtggtgagaaccacctccatagtaatggccaccgcc--------- 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||| ||||| ||             
T  36492853 ggccatggcaatagtaatggcaaccacctccaccatggtgagaaccacctccacc---gtgagaaccacctccatagtaatgtccaccaccattgtggta 36492949  T
Q  409 ---accgccattgtggtaattaccgccaccaccatatttggcatcatttacttcattagtcttttc 471  Q
       ||| |||   | || || ||| |||||||||||||||||||||||||||||||||||||||||    
T  36492950 attaccaccaccattgtgataaccaccaccaccatatttggcatcatttacttcattagtcttttc 36493015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 275 - 601
Target Start/End: Original strand, 36493014 - 36493334
Alignment:
Q  275 tcctcagcttgcacggcaacaaattcagcatgtgagcagcaatggccatggcaatagtaatggcaaccacctccaccatggtgagaaccacctccaccgt 374  Q
    ||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  36493014 tcctcagtttggacggcaacaaattcagcatatgagcagcaatggccatggcaatagtaatgacaaccacctccaccgtggtgagaaccacctccaccgt 36493113  T
Q  375 ggtgagaaccacctccatagtaatggccaccgccaccgccattgtggtaattaccgccaccaccatatttggcatcatttacttcattagtcttttcaac 474  Q
    |||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  36493114 ggtgagaaccacctccatagtaatggcca------ccgccattgtggtaattaccgccaccaccatatttggcatcgtttacttcattagtcttttcaac 36493207  T
Q  475 aacctctgcaaacataatatatatgaacgattacattttatatacatataggaatgatcaaatcacatcgatgtaatgtttgaatatttttacaatgctc 574  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  36493208 aacctctgcaaacataatatatatgaacgattacattttatatacatataagaatgatcaaatcacatcgctgtaatgtttgaatatttttacaatgctc 36493307  T
Q  575 aaaaacttcttatttaatacttatttt 601  Q
    ||||||||||||||| |||||||||||    
T  36493308 aaaaacttcttatttgatacttatttt 36493334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 174 - 377
Target Start/End: Original strand, 36475745 - 36475945
Alignment:
Q  174 ttttttgatcaactcacaaacattatttattcatgaaatttattattaagaaagagtgcatcataacatgatcatagcattatgatcaattctgagtttt 273  Q
    ||||||||||||| ||||| ||||||||||||||| |||||| || || |||||||||||||||  |||||||||||||||||||||| || ||||| ||    
T  36475745 ttttttgatcaacacacaa-cattatttattcatggaatttagtacta-gaaagagtgcatcatg-catgatcatagcattatgatcagttttgagtatt 36475841  T
Q  274 gtcctcagcttgcacggcaacaaattcagcatgtgagcagcaatggccatggcaatagtaatggcaaccacctccaccatggtgagaaccacctccaccg 373  Q
    ||||| |||||||| |||||||||||||||||| ||||||||   ||||||||||| ||| ||||||||||||||||| ||||   |||| ||||||||     
T  36475842 gtccttagcttgcatggcaacaaattcagcatgcgagcagcacctgccatggcaatggtattggcaaccacctccaccgtggttgtaaccgcctccacca 36475941  T
Q  374 tggt 377  Q
    ||||    
T  36475942 tggt 36475945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 431 - 488
Target Start/End: Original strand, 36476149 - 36476206
Alignment:
Q  431 ccaccaccatatttggcatcatttacttcattagtcttttcaacaacctctgcaaaca 488  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  36476149 ccaccaccatatttggcatcatttacttcattagtcttttcaacaacttctgcaaaca 36476206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 437 - 501
Target Start/End: Original strand, 36468358 - 36468422
Alignment:
Q  437 ccatatttggcatcatttacttcattagtcttttcaacaacctctgcaaacataatatatatgaa 501  Q
    |||||||||||||| |||||||||||||||||||| ||||| |||||||||| ||||||||||||    
T  36468358 ccatatttggcatcgtttacttcattagtcttttctacaacttctgcaaacacaatatatatgaa 36468422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 437 - 496
Target Start/End: Original strand, 36445955 - 36446014
Alignment:
Q  437 ccatatttggcatcatttacttcattagtcttttcaacaacctctgcaaacataatatat 496  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||    
T  36445955 ccatatttggcatcgtttacttcattagtcttttcaacaacttctgcaaacacaatatat 36446014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 431 - 471
Target Start/End: Original strand, 36435734 - 36435774
Alignment:
Q  431 ccaccaccatatttggcatcatttacttcattagtcttttc 471  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  36435734 ccaccaccatatttggcatcatttacttcattagtcttttc 36435774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 437 - 501
Target Start/End: Original strand, 36436115 - 36436178
Alignment:
Q  437 ccatatttggcatcatttacttcattagtcttttcaacaacctctgcaaacataatatatatgaa 501  Q
    |||||||||||||| |||||||||||||||||||||||||| |||| |||||  |||||||||||    
T  36436115 ccatatttggcatcgtttacttcattagtcttttcaacaacttctg-aaacacgatatatatgaa 36436178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 431 - 471
Target Start/End: Original strand, 36445655 - 36445695
Alignment:
Q  431 ccaccaccatatttggcatcatttacttcattagtcttttc 471  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  36445655 ccaccaccatatttggcatcatttacttcattagtcttttc 36445695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 36445262 - 36445335
Alignment:
Q  23 acacattcaccattgcttgcaaaagctcatcaccatcacagatacatagattgatgcaaatttatacatgattt 96  Q
    ||||||||| ||||  ||| ||||||| |||| ||| ||| ||||||||  |||||||||||||||||||||||    
T  36445262 acacattcatcattttttggaaaagcttatcatcattacaaatacatagtctgatgcaaatttatacatgattt 36445335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 36467731 - 36467804
Alignment:
Q  23 acacattcaccattgcttgcaaaagctcatcaccatcacagatacatagattgatgcaaatttatacatgattt 96  Q
    ||||||||| ||||  ||| ||||||| |||| ||| ||| ||||||||  |||||||||||||||||||||||    
T  36467731 acacattcatcattttttggaaaagcttatcatcattacaaatacatagtctgatgcaaatttatacatgattt 36467804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 431 - 471
Target Start/End: Original strand, 36468088 - 36468128
Alignment:
Q  431 ccaccaccatatttggcatcatttacttcattagtcttttc 471  Q
    |||||||||| | ||||||||||||||||||||||||||||    
T  36468088 ccaccaccatttctggcatcatttacttcattagtcttttc 36468128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 36475639 - 36475714
Alignment:
Q  64 atacatagattgatgcaaatttatacatgattttcactcctggaatatctttact--atatagtgacaaaatagat 137  Q
    |||||||||||| |||||||||||||||||||| ||||  || ||||||| || |  |||||||||||| ||||||    
T  36475639 atacatagattgttgcaaatttatacatgatttccactaatgaaatatctatattacatatagtgacaagatagat 36475714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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