View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18597_low_30 (Length: 261)
Name: NF18597_low_30
Description: NF18597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18597_low_30 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 28334895 - 28334664
Alignment:
| Q |
17 |
cattttgtgattagccatttaataccaatctaccgtgtttaccggccaggtcaaaggttaaggctgttgcaattaaaaattaacacactcgtgaagtttc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28334895 |
cattttgtgattagccatttaataccaatctaccgtgtttaccggccaggtcaaaggttaaggctgttgcaattaaaaattaacacactcgtgaagtttc |
28334796 |
T |
|
| Q |
117 |
cgcgatnnnnnnnttcgctttgtttagcagcgctcatccgtaaaattaattaggaagctttgcactaggaattgagggagaggttataaagttctcagtc |
216 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28334795 |
cgcgataaaaaaattcgctttgtttagcatcgctcatccgtaaaattaattaggaagctttgcactaggaattgagggagaggttataaagttctcagtc |
28334696 |
T |
|
| Q |
217 |
ctgatttattcaataagaatattgtaattgat |
248 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |
|
|
| T |
28334695 |
ctgatttattcaataaaaatattgtaattgat |
28334664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 28338120 - 28337889
Alignment:
| Q |
17 |
cattttgtgattagccatttaataccaatctaccgtgtttaccggccaggtcaaaggttaaggctgttgcaattaaaaattaacacactcgtgaagtttc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28338120 |
cattttgtgattagccatttaataccaatctaccgtgttttccggccaggttaaagattaaggctgttgcaattaaaaattaacacactcgtgaagtttc |
28338021 |
T |
|
| Q |
117 |
cgcgatnnnnnnnttcgctttgtttagcagcgctcatccgtaaaattaattaggaagctttgcactaggaattgagggagaggttataaagttctcagtc |
216 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28338020 |
cgcgataaaaaaattcgctttgtttagcagttctcatccgtaaaattaattaggaggctttgcactaggaattgagggagagtttataaagttctcagtc |
28337921 |
T |
|
| Q |
217 |
ctgatttattcaataagaatattgtaattgat |
248 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |
|
|
| T |
28337920 |
ctgatttattcaataaaaatattgtaattgat |
28337889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 122
Target Start/End: Original strand, 39465800 - 39465898
Alignment:
| Q |
24 |
tgattagccatttaataccaatctaccgtgtttaccggccaggtcaaaggttaaggctgttgcaattaaaaattaacacactcgtgaagtttccgcgat |
122 |
Q |
| |
|
||||||||||||||| | |||||| |||| ||| | | ||||||||||| ||||||||| ||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
39465800 |
tgattagccatttaacatcaatctcccgttttttctgaccaggtcaaagtttaaggctgctgcaattaaaaattaacacgctcgtgacgtttccgcgat |
39465898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University