View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18597_low_33 (Length: 249)

Name: NF18597_low_33
Description: NF18597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18597_low_33
NF18597_low_33
[»] chr5 (26 HSPs)
chr5 (5-249)||(24422231-24422475)
chr5 (5-249)||(24412782-24413026)
chr5 (5-242)||(18569000-18569236)
chr5 (15-249)||(30454201-30454435)
chr5 (5-249)||(30459249-30459493)
chr5 (5-249)||(30444819-30445063)
chr5 (5-249)||(22489139-22489383)
chr5 (5-249)||(4635899-4636143)
chr5 (25-241)||(24244053-24244267)
chr5 (25-241)||(24290677-24290891)
chr5 (5-200)||(42732567-42732761)
chr5 (14-237)||(13815372-13815593)
chr5 (5-203)||(33955491-33955687)
chr5 (9-203)||(11223376-11223568)
chr5 (30-200)||(5600580-5600749)
chr5 (30-200)||(5610226-5610395)
chr5 (5-203)||(20035999-20036195)
chr5 (53-203)||(22118140-22118291)
chr5 (30-200)||(31150651-31150820)
chr5 (19-203)||(20834431-20834614)
chr5 (5-96)||(22448320-22448411)
chr5 (5-180)||(26652642-26652816)
chr5 (5-180)||(26924227-26924401)
chr5 (14-96)||(37514858-37514940)
chr5 (5-71)||(22457656-22457722)
chr5 (30-85)||(16111002-16111058)
[»] chr4 (14 HSPs)
chr4 (5-249)||(3242277-3242521)
chr4 (5-249)||(54689904-54690147)
chr4 (5-249)||(54699335-54699578)
chr4 (5-249)||(3918020-3918263)
chr4 (5-249)||(26812462-26812706)
chr4 (5-249)||(26821929-26822173)
chr4 (5-249)||(37059040-37059284)
chr4 (5-249)||(15842888-15843132)
chr4 (5-203)||(20884440-20884636)
chr4 (5-203)||(50516488-50516685)
chr4 (30-200)||(23622919-23623088)
chr4 (25-203)||(11482315-11482492)
chr4 (14-118)||(18125411-18125514)
chr4 (123-200)||(16489947-16490025)
[»] chr3 (21 HSPs)
chr3 (5-249)||(24794536-24794780)
chr3 (5-249)||(28367643-28367887)
chr3 (5-249)||(28375461-28375705)
chr3 (5-249)||(28383283-28383527)
chr3 (5-249)||(28351710-28351954)
chr3 (5-249)||(38529167-38529411)
chr3 (5-241)||(4951555-4951791)
chr3 (18-203)||(5385690-5385874)
chr3 (15-203)||(13328278-13328465)
chr3 (30-200)||(17529877-17530046)
chr3 (5-203)||(46305565-46305760)
chr3 (5-203)||(23487041-23487240)
chr3 (30-200)||(32877870-32878039)
chr3 (30-200)||(54624655-54624824)
chr3 (30-200)||(48978670-48978835)
chr3 (30-200)||(48988210-48988375)
chr3 (99-201)||(7784091-7784194)
chr3 (14-115)||(7783988-7784089)
chr3 (30-156)||(19388809-19388936)
chr3 (14-118)||(4361515-4361618)
chr3 (52-96)||(24285493-24285537)
[»] scaffold0028 (2 HSPs)
scaffold0028 (5-249)||(94422-94665)
scaffold0028 (5-249)||(103863-104106)
[»] chr6 (12 HSPs)
chr6 (5-249)||(23895606-23895850)
chr6 (5-249)||(18420505-18420749)
chr6 (5-203)||(22066293-22066489)
chr6 (17-203)||(23884492-23884677)
chr6 (30-201)||(14102308-14102480)
chr6 (15-159)||(10259779-10259922)
chr6 (15-156)||(11421451-11421591)
chr6 (5-202)||(17512213-17512408)
chr6 (14-155)||(12173469-12173609)
chr6 (38-156)||(23110242-23110359)
chr6 (74-200)||(12415064-12415190)
chr6 (102-196)||(13218359-13218453)
[»] scaffold0482 (1 HSPs)
scaffold0482 (14-249)||(3487-3722)
[»] chr8 (25 HSPs)
chr8 (14-249)||(7789077-7789312)
chr8 (5-249)||(20714023-20714267)
chr8 (15-241)||(25051063-25051287)
chr8 (18-241)||(18883163-18883384)
chr8 (15-241)||(25037026-25037250)
chr8 (25-241)||(18232890-18233104)
chr8 (25-241)||(18242341-18242555)
chr8 (14-241)||(18143428-18143653)
chr8 (25-241)||(18251792-18252006)
chr8 (15-200)||(31575411-31575595)
chr8 (5-203)||(42712168-42712365)
chr8 (5-203)||(20044818-20045015)
chr8 (5-203)||(20030179-20030376)
chr8 (5-202)||(12925355-12925550)
chr8 (14-241)||(4843721-4843948)
chr8 (5-203)||(12767631-12767830)
chr8 (5-157)||(33592124-33592275)
chr8 (5-157)||(33601763-33601914)
chr8 (16-203)||(15833950-15834137)
chr8 (5-163)||(12915499-12915655)
chr8 (17-157)||(24096077-24096217)
chr8 (25-162)||(24634009-24634145)
chr8 (14-80)||(20714417-20714483)
chr8 (40-157)||(42896174-42896290)
chr8 (18-76)||(26194048-26194106)
[»] scaffold0040 (2 HSPs)
scaffold0040 (5-249)||(30813-31057)
scaffold0040 (5-241)||(10006-10239)
[»] chr7 (14 HSPs)
chr7 (5-249)||(7592960-7593204)
chr7 (5-249)||(15174494-15174738)
chr7 (25-241)||(11634340-11634554)
chr7 (14-203)||(14634777-14634965)
chr7 (5-203)||(14644469-14644665)
chr7 (14-203)||(33292176-33292364)
chr7 (5-203)||(15947364-15947560)
chr7 (5-202)||(32817997-32818193)
chr7 (5-203)||(9736946-9737143)
chr7 (15-201)||(19352589-19352775)
chr7 (5-157)||(13874432-13874582)
chr7 (14-129)||(48710006-48710121)
chr7 (30-197)||(4306573-4306739)
chr7 (135-203)||(48711401-48711469)
[»] scaffold0001 (1 HSPs)
scaffold0001 (5-249)||(408282-408526)
[»] chr2 (13 HSPs)
chr2 (5-245)||(31710456-31710696)
chr2 (5-249)||(24022732-24022976)
chr2 (14-237)||(14273170-14273393)
chr2 (14-203)||(35877516-35877704)
chr2 (14-203)||(35885005-35885193)
chr2 (14-203)||(36724718-36724906)
chr2 (30-200)||(1800493-1800662)
chr2 (30-200)||(22632402-22632571)
chr2 (17-203)||(3396923-3397108)
chr2 (30-200)||(1790999-1791164)
chr2 (14-150)||(18578739-18578874)
chr2 (14-85)||(29911278-29911349)
chr2 (27-96)||(16446670-16446739)
[»] scaffold0010 (1 HSPs)
scaffold0010 (18-241)||(256921-257142)
[»] chr1 (11 HSPs)
chr1 (14-203)||(5378423-5378613)
chr1 (5-241)||(15809966-15810208)
chr1 (5-203)||(40999025-40999224)
chr1 (14-203)||(14272017-14272205)
chr1 (19-203)||(14281888-14282071)
chr1 (14-200)||(26906245-26906431)
chr1 (27-203)||(3470949-3471124)
chr1 (5-157)||(21919421-21919572)
chr1 (14-189)||(21633594-21633768)
chr1 (16-203)||(30676788-30676976)
chr1 (18-159)||(28310018-28310155)
[»] scaffold0206 (1 HSPs)
scaffold0206 (5-203)||(2109-2306)
[»] scaffold0021 (3 HSPs)
scaffold0021 (5-203)||(124047-124244)
scaffold0021 (30-181)||(100002-100152)
scaffold0021 (135-203)||(143169-143237)
[»] scaffold0269 (1 HSPs)
scaffold0269 (30-200)||(14830-14999)
[»] scaffold0247 (1 HSPs)
scaffold0247 (30-200)||(24593-24762)
[»] scaffold0053 (1 HSPs)
scaffold0053 (5-157)||(2251-2402)
[»] scaffold0334 (1 HSPs)
scaffold0334 (5-157)||(12538-12689)
[»] scaffold0223 (1 HSPs)
scaffold0223 (40-203)||(27078-27246)
[»] scaffold0233 (1 HSPs)
scaffold0233 (203-249)||(26309-26355)


Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 5 - 249
Target Start/End: Complemental strand, 24422475 - 24422231
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 104  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24422475 gagagagaagaataacacaggagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 24422376  T
Q  105 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgca 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  24422375 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatcaacctcagcaggcttatacaattctttgca 24422276  T
Q  205 cactagcaaaagaaaggttgaaattttctatctcaaaactattaa 249  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  24422275 cactagcaaaagaaaggttggaattttctatctcaaaactattaa 24422231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 5 - 249
Target Start/End: Complemental strand, 24413026 - 24412782
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 104  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24413026 gagagagaagaataacacaggagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 24412927  T
Q  105 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgca 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  24412926 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtctgtaacctctgtattatcaacctcagcaggcttatacaattctttgca 24412827  T
Q  205 cactagcaaaagaaaggttgaaattttctatctcaaaactattaa 249  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  24412826 cactagcaaaagaaaggttggaattttctatctcaaaactattaa 24412782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 5 - 242
Target Start/End: Complemental strand, 18569236 - 18569000
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 104  Q
    |||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18569236 gagagaga-gaataacacaggagagttatcctggttcaccaaacccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 18569138  T
Q  105 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgca 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18569137 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatcaacctcagcaggcttatacaattctttgca 18569038  T
Q  205 cactagcaaaagaaaggttgaaattttctatctcaaaa 242  Q
    |||||||||||||||||||| |||||||||||||||||    
T  18569037 cactagcaaaagaaaggttggaattttctatctcaaaa 18569000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 15 - 249
Target Start/End: Original strand, 30454201 - 30454435
Alignment:
Q  15 aataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaac 114  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30454201 aataacacaggagagttatcctggttcaccaaacccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaac 30454300  T
Q  115 ttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgcacactagcaaa 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30454301 ttctgactagcactacaatttcttgatcacaccagatcagtccgtaacacctgtattatcaacctcagcaggcttatacaattctttgcacactagcaaa 30454400  T
Q  215 agaaaggttgaaattttctatctcaaaactattaa 249  Q
    |||||||||| ||||||||||||||||||||||||    
T  30454401 agaaaggttggaattttctatctcaaaactattaa 30454435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 5 - 249
Target Start/End: Original strand, 30459249 - 30459493
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 104  Q
    ||||||||  ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30459249 gagagagaaaaataacacaggagagttatcctggttcaccaaacccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 30459348  T
Q  105 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgca 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||| |||||||||||||||||||||||    
T  30459349 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacacctgtattatcaacctcggcaggcttatacaattctttgca 30459448  T
Q  205 cactagcaaaagaaaggttgaaattttctatctcaaaactattaa 249  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  30459449 cactagcaaaagaaaggttggaattttctatctcaaaactattaa 30459493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 5 - 249
Target Start/End: Original strand, 30444819 - 30445063
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 104  Q
    ||||||||  ||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30444819 gagagagagaaataacacaggagagttatcctgattcaccaaacccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 30444918  T
Q  105 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgca 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||| |||||||||||||||||||||||||||||    
T  30444919 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccataacacctgtattatcaacctcagcaggcttatacaattctttgca 30445018  T
Q  205 cactagcaaaagaaaggttgaaattttctatctcaaaactattaa 249  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  30445019 cactagcaaaagaaaggttggaattttctatctcaaaactattaa 30445063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 5 - 249
Target Start/End: Complemental strand, 22489383 - 22489139
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 104  Q
    |||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22489383 gagagagaagaataacacaggagagttatcctggttcaccaaacccggctacttccagtccccacacctcgtgtgagattatccactatagttgtcttgc 22489284  T
Q  105 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgca 204  Q
    |||||||||||| |||||||||||| ||  ||||||||||||||||||||||||| ||  |||||||||| |||||||||| ||| ||||||||||||||    
T  22489283 taacagaaacttatgactagcactataagatcttgatcacaccagatcagtccgttacacctgtattatcaacctcagcagacttctacaattctttgca 22489184  T
Q  205 cactagcaaaagaaaggttgaaattttctatctcaaaactattaa 249  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  22489183 cactagcaaaagaaaggttggaattttctatctcaaaactattaa 22489139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 5 - 249
Target Start/End: Complemental strand, 4636143 - 4635899
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 104  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||  ||||||||||||||||||||| ||||||    
T  4636143 gagagagaggaataacacatgagagttatcctggttcaccaaacccggctattttcagtccccacacctcacgtgagattatccactatagttgtcttgc 4636044  T
Q  105 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgca 204  Q
    ||||||||||||||||| ||||||| ||  |||||||||||||| |||||||||| ||  |||| ||||| |||||||||||||| ||||||||||||||    
T  4636043 taacagaaacttctgaccagcactataagatcttgatcacaccatatcagtccgttacacctgttttatcaacctcagcaggcttctacaattctttgca 4635944  T
Q  205 cactagcaaaagaaaggttgaaattttctatctcaaaactattaa 249  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||    
T  4635943 cactagcaaaagaaatgttggaattttctatctcaaaactattaa 4635899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 25 - 241
Target Start/End: Original strand, 24244053 - 24244267
Alignment:
Q  25 gagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttctgactag 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||  | |  ||||||||||| |  |     
T  24244053 gagagttatcctggttcaccaaatccggctacttccagtccccacacttcgtgtgagattatccactatagtattc-agttggcagaaacttctaatcaa 24244151  T
Q  125 cactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggctt-atacaattctttgcacactagcaaaagaaaggtt 223  Q
    ||||||||  ||||||||||||| |||||||  ||||||||||||||||| ||||||||||| ||  ||||||||||||  |||||||||||||||||||    
T  24244152 cactacaacgtcttgatcacacccgatcagtttgtaacctctgtattatcaacctcagcaggattcttacaattctttg--cactagcaaaagaaaggtt 24244249  T
Q  224 gaaattttctatctcaaa 241  Q
    | ||||||||||||||||    
T  24244250 ggaattttctatctcaaa 24244267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 25 - 241
Target Start/End: Original strand, 24290677 - 24290891
Alignment:
Q  25 gagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttctgactag 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||  | |  ||||||||||| |  |     
T  24290677 gagagttatcctggttcaccaaatccggctacttccagtccccacacttcgtgtgagattatccactatagtattc-agttggcagaaacttctaatcaa 24290775  T
Q  125 cactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggctt-atacaattctttgcacactagcaaaagaaaggtt 223  Q
    ||||||||  ||||||||||||| |||||||  ||||||||||||||||| ||||||||||| ||  ||||||||||||  |||||||||||||||||||    
T  24290776 cactacaacgtcttgatcacacccgatcagtttgtaacctctgtattatcaacctcagcaggattcttacaattctttg--cactagcaaaagaaaggtt 24290873  T
Q  224 gaaattttctatctcaaa 241  Q
    | ||||||||||||||||    
T  24290874 ggaattttctatctcaaa 24290891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 5 - 200
Target Start/End: Original strand, 42732567 - 42732761
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 104  Q
    |||| ||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||  ||    
T  42732567 gagaaagaagaataacacaagagagttatcctggttcaccaaacccggctacttccagtccccacacttcgtgtgagattatccactatagtattc-agc 42732665  T
Q  105 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctt 200  Q
    ||  |||||||||| |||||||||| ||  |||||||||||||||||||||||  |||| |||||||||| |||||| ||||||| ||||||||||    
T  42732666 tagtagaaacttctaactagcactataaggtcttgatcacaccagatcagtccagaacccctgtattatcaacctcaacaggcttctacaattctt 42732761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 14 - 237
Target Start/End: Original strand, 13815372 - 13815593
Alignment:
Q  14 gaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttc--ttgctaacaga 111  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||  ||| |   |||    
T  13815372 gaataacacaggagagttatcctggttcaccaaatccggctacttccagtccccacacttcatgtgagattatccactatagtattcagttggt---aga 13815468  T
Q  112 aacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggctt-atacaattctttgcacactag 210  Q
    ||||||| || | ||||| ||  ||||||||||||||||||| || ||||||  ||||||||| |||||| |||||||  ||||||||||||  ||||||    
T  13815469 aacttctaaccaacactataaggtcttgatcacaccagatcattctgtaacccttgtattatcaacctcaacaggcttcttacaattctttg--cactag 13815566  T
Q  211 caaaagaaaggttgaaattttctatct 237  Q
    |||||||||||||| ||||||||||||    
T  13815567 caaaagaaaggttggaattttctatct 13815593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 5 - 203
Target Start/End: Original strand, 33955491 - 33955687
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttc--tt 102  Q
    |||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| | |  ||    
T  33955491 gagagaga-gaataacacaggagagttatcctggttcaccaaacccggctacttccagtccccacacttcgtgtgagattatccactatagtatgcagtt 33955589  T
Q  103 gctaacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttg 202  Q
    | |   |||||||||| || | ||||| ||  ||||||||||||||||||||| ||||||| |||||||||| |||||||||||||| ||||||||||||    
T  33955590 ggt---agaaacttctaaccaacactataaggtcttgatcacaccagatcagtacgtaaccactgtattatcaacctcagcaggcttctacaattctttg 33955686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 9 - 203
Target Start/End: Complemental strand, 11223568 - 11223376
Alignment:
Q  9 gagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttc-ttgctaa 107  Q
    |||| ||||||||||  ||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||| |||||| | |  || |      
T  11223568 gagaagaataacacaaaagagttatcctggttcaccaaactcggctacttccagtccccacacttcgtgtgagattatccattatagtatacagtggt-- 11223471  T
Q  108 cagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgc 203  Q
     |||||||||| || | ||||| ||  |||||||||||||||||||||| |||||| |||||||||| |||||||||||||| |||||||||||||    
T  11223470 -agaaacttctaaccaacactataaggtcttgatcacaccagatcagtctgtaacccctgtattatcaacctcagcaggcttctacaattctttgc 11223376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 30 - 200
Target Start/End: Complemental strand, 5600749 - 5600580
Alignment:
Q  30 ttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttctgactagcacta 129  Q
    |||||||||||| || || |||||||| ||||||||||||||| |||||||||||||||||||||| | || ||||| ||||||||||||| ||||||||    
T  5600749 ttatcctggttcgcctaa-ccggctacgtccagtccccacaccacgtgtgagattatccactatag-tatcctgctatcagaaacttctgaatagcacta 5600652  T
Q  130 caatttcttgatcacaccagatcagtccgtaac-ctctgtattatccacctcagcaggcttatacaattctt 200  Q
     ||| | ||||||||||||||||||||||| || |||||||||||| |||||||||||||| ||| ||||||    
T  5600651 taatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 5600580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 30 - 200
Target Start/End: Complemental strand, 5610395 - 5610226
Alignment:
Q  30 ttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttctgactagcacta 129  Q
    |||||||||||| || || |||||||| ||||||||||||||| |||||||||||||||||||||| | || ||||| ||||||||||||| ||||||||    
T  5610395 ttatcctggttcgcctaa-ccggctacgtccagtccccacaccacgtgtgagattatccactatag-tatcctgctatcagaaacttctgaatagcacta 5610298  T
Q  130 caatttcttgatcacaccagatcagtccgtaac-ctctgtattatccacctcagcaggcttatacaattctt 200  Q
     ||| | ||||||||||||||||||||||| || |||||||||||| |||||||||||||| ||| ||||||    
T  5610297 taatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 5610226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 5 - 203
Target Start/End: Complemental strand, 20036195 - 20035999
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttc--tt 102  Q
    |||||||| |||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||| | |  ||    
T  20036195 gagagaga-gaataacataggagagttatcctggttcaccaaacccggctacttccagtccccacacatcatgtgagattatccactatagtatacagtt 20036097  T
Q  103 gctaacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttg 202  Q
    | |   |||||||||| || | ||||| ||  ||||||||||||||||||||||| ||||| || ||||||| |||| ||||||||| ||||||||||||    
T  20036096 ggt---agaaacttctaaccaacactataaggtcttgatcacaccagatcagtccataaccactatattatcaaccttagcaggcttctacaattctttg 20036000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 53 - 203
Target Start/End: Original strand, 22118140 - 22118291
Alignment:
Q  53 ctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttctgactagcactacaatttcttgatcacaccagatc 152  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| || ||||| ||  ||||||||||||||||||    
T  22118140 ctacttccagtccccacacctcgtgtgagattatccattatagttgtcttgctaacagaaacttctgaataacactataaggtcttgatcacaccagatc 22118239  T
Q  153 agtccgtaacct-ctgtattatccacctcagcaggcttatacaattctttgc 203  Q
    |||| || || | |||||||||| || |||||| |||| ||||||| |||||    
T  22118240 agtctgttacatcctgtattatcaacatcagcatgcttctacaattatttgc 22118291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 30 - 200
Target Start/End: Original strand, 31150651 - 31150820
Alignment:
Q  30 ttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttctgactagcacta 129  Q
    |||||||||||| || || |||||||| ||||||||||||||  ||||||||||||||||||||||| | || |||| ||||||||||||| ||||||||    
T  31150651 ttatcctggttcgcctaa-ccggctacgtccagtccccacactacgtgtgagattatccactatagtatcct-gctatcagaaacttctgaatagcacta 31150748  T
Q  130 caatttcttgatcacaccagatcagtccgtaac-ctctgtattatccacctcagcaggcttatacaattctt 200  Q
     ||| | ||||||||||||||||||||||| || |||||||||||| |||||||||||||| ||| ||||||    
T  31150749 taatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 31150820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 20834614 - 20834431
Alignment:
Q  19 acacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttc--ttgctaacagaaactt 116  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||| | |  ||| |   ||||||||    
T  20834614 acacaggagagttatcctggttcaccaaacccggctacttccagtccccacactccgtgtgagattatccactatagtatgcagttggt---agaaactt 20834518  T
Q  117 ctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgc 203  Q
    || || | ||||| ||  ||||||||| ||||||||||| ||||||| |||||| ||| |||||||||||||| | |||||||||||    
T  20834517 ctaaccaacactataaggtcttgatcataccagatcagttcgtaaccactgtataatcaacctcagcaggcttctccaattctttgc 20834431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 5 - 96
Target Start/End: Original strand, 22448320 - 22448411
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagt 96  Q
    ||||||||  ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  22448320 gagagagagaaataacacaagagagttatcctggttcacccaatccggctacttccagtccccacacttcgtgtgagattatccactatagt 22448411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 5 - 180
Target Start/End: Complemental strand, 26652816 - 26652642
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 104  Q
    |||| ||| |||||||||| ||||||||| ||||||||||||| | | ||||||||||||||||||| ||||||||||| |||||||||||| |||  ||    
T  26652816 gagaaagaagaataacacaggagagttatgctggttcaccaaacctgactacttccagtccccacacttcgtgtgagataatccactatagtattc-agc 26652718  T
Q  105 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctc 180  Q
    ||| |||||||||| ||||||||||  |  |||||||||||||| |||||| |  ||||  ||||||||| |||||    
T  26652717 taatagaaacttctaactagcactattaggtcttgatcacaccatatcagttcagaacccttgtattatcaacctc 26652642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 5 - 180
Target Start/End: Complemental strand, 26924401 - 26924227
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 104  Q
    |||| ||| |||||||||| ||||||||| ||||||||||||| | | ||||||||||||||||||| ||||||||||| |||||||||||| |||  ||    
T  26924401 gagaaagaagaataacacaggagagttatgctggttcaccaaacctgactacttccagtccccacacttcgtgtgagataatccactatagtattc-agc 26924303  T
Q  105 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctc 180  Q
    ||| |||||||||| ||||||||||  |  |||||||||||||| |||||| |  ||||  ||||||||| |||||    
T  26924302 taatagaaacttctaactagcactattaggtcttgatcacaccatatcagttcagaacccttgtattatcaacctc 26924227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 37514858 - 37514940
Alignment:
Q  14 gaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagt 96  Q
    ||||||||||||||| |||| |||||||| |||| ||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  37514858 gaataacacatgagatttatactggttcatcaaagccggctacttctagtccccacaccttgtgtgagattatccactatagt 37514940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 22457656 - 22457722
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacac 71  Q
    ||||||||  |||||||||  ||||||||||| ||||||| ||||||||||||||||||||||||||    
T  22457656 gagagagagaaataacacagaagagttatccttgttcacccaatccggctacttccagtccccacac 22457722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 16111058 - 16111002
Alignment:
Q  30 ttatcctggttcaccaaat-ccggctacttccagtccccacacctcgtgtgagatta 85  Q
    ||||| ||||||||||||  |||||||||||||||||| |||| |||||||||||||    
T  16111058 ttatcatggttcaccaaaagccggctacttccagtcccgacacttcgtgtgagatta 16111002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 5 - 249
Target Start/End: Original strand, 3242277 - 3242521
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 104  Q
    |||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3242277 gagagagaagaataacacaggagagttatcctggttcaccaaacccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 3242376  T
Q  105 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgca 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3242377 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatcaacctcagcaggcttatacaattctttgca 3242476  T
Q  205 cactagcaaaagaaaggttgaaattttctatctcaaaactattaa 249  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  3242477 cactagcaaaagaaaggttggaattttctatctcaaaactattaa 3242521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 5 - 249
Target Start/End: Original strand, 54689904 - 54690147
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 104  Q
    |||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54689904 gagagaga-gaataacacaggagagttatcctggttcaccaaacccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 54690002  T
Q  105 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgca 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  54690003 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatcaacctcagcaggcttatacaattctttgca 54690102  T
Q  205 cactagcaaaagaaaggttgaaattttctatctcaaaactattaa 249  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  54690103 cactagcaaaagaaaggttggaattttctatctcaaaactattaa 54690147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 5 - 249
Target Start/End: Original strand, 54699335 - 54699578
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 104  Q
    |||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54699335 gagagaga-gaataacacaggagagttatcctggttcaccaaacccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 54699433  T
Q  105 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgca 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  54699434 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatcaacctcagcaggcttatacaattctttgca 54699533  T
Q  205 cactagcaaaagaaaggttgaaattttctatctcaaaactattaa 249  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  54699534 cactagcaaaagaaaggttggaattttctatctcaaaactattaa 54699578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 5 - 249
Target Start/End: Complemental strand, 3918263 - 3918020
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 104  Q
    |||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3918263 gagagaga-gaataacacaggagagttatcctggttcaccaaacccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 3918165  T
Q  105 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgca 204  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3918164 taacagaaacttctgactagcattacaatttcttgatcacaccagatcagtccgtaacctctgtattatcaacctcagcaggcttatacaattctttgca 3918065  T
Q  205 cactagcaaaagaaaggttgaaattttctatctcaaaactattaa 249  Q
    |||||||||||||||||||| |||||||| |||||||||||||||    
T  3918064 cactagcaaaagaaaggttggaattttctttctcaaaactattaa 3918020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 5 - 249
Target Start/End: Complemental strand, 26812706 - 26812462
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 104  Q
    |||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26812706 gagagagaagaataacacaggagagttatcctggttcaccaaacccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 26812607  T
Q  105 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgca 204  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||    
T  26812606 taacagaaacttctgactagcactacaatatcttgatcacaccagatcagtccgtaacacctgtattatcaacctcagcaggcttatacaattctttgca 26812507  T
Q  205 cactagcaaaagaaaggttgaaattttctatctcaaaactattaa 249  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  26812506 cactagcaaaagaaaggttggaattttctatctcaaaactattaa 26812462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 5 - 249
Target Start/End: Complemental strand, 26822173 - 26821929
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 104  Q
    |||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26822173 gagagagaagaataacacaggagagttatcctggttcaccaaacccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 26822074  T
Q  105 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgca 204  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||    
T  26822073 taacagaaacttctgactagcactacaatatcttgatcacaccagatcagtccgtaacacctgtattatcaacctcagcaggcttatacaattctttgca 26821974  T
Q  205 cactagcaaaagaaaggttgaaattttctatctcaaaactattaa 249  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  26821973 cactagcaaaagaaaggttggaattttctatctcaaaactattaa 26821929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 5 - 249
Target Start/End: Complemental strand, 37059284 - 37059040
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 104  Q
    |||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37059284 gagagagaagaataacacaggagagttatcctggttcaccaaacccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 37059185  T
Q  105 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgca 204  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||  |||||||||| |||||||||||||||||||||||||||||    
T  37059184 taacagaaacttctgactagcactacaagatcttgatcacaccagatcagtccgttacacctgtattatcaacctcagcaggcttatacaattctttgca 37059085  T
Q  205 cactagcaaaagaaaggttgaaattttctatctcaaaactattaa 249  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  37059084 cactagcaaaagaaaggttggaattttctatctcaaaactattaa 37059040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 5 - 249
Target Start/End: Original strand, 15842888 - 15843132
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 104  Q
    |||||||| |||||||||| |||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  15842888 gagagagaggaataacacaggagagttatcttggttcaccaaactcggctacttccagtccccacacctcgtgtgagattatccactatagttgtcttgc 15842987  T
Q  105 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgca 204  Q
    ||||||||||||||||||||||||| ||  ||||||||||| |||||||||| || ||  |||||||||| |||| ||||||||| ||||||||||||||    
T  15842988 taacagaaacttctgactagcactataagatcttgatcacatcagatcagtctgttacacctgtattatcaacctaagcaggcttctacaattctttgca 15843087  T
Q  205 cactagcaaaagaaaggttgaaattttctatctcaaaactattaa 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  15843088 cactagcaaaagaaaggttgaaattttctatctcaaaactattaa 15843132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 5 - 203
Target Start/End: Original strand, 20884440 - 20884636
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttc--tt 102  Q
    |||||||| |||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||| | |  ||    
T  20884440 gagagaga-gaataacacaggagagttatcctggttccccaaacccggctacttccagtccccacacttcgtgtgagattatccactatagtatgcagtt 20884538  T
Q  103 gctaacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttg 202  Q
    | |   |||||||||| || | ||||| ||  | ||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||    
T  20884539 ggt---agaaacttctaaccaacactataaggttttgatcacaccagatcagtccgtaaccactgtattatcaacctcagcaggcttctacaattctttg 20884635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 5 - 203
Target Start/End: Original strand, 50516488 - 50516685
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttc--tt 102  Q
    |||| ||| |||||||||| ||||||||||||||||| ||||| ||| ||||||||||||||||||| |||||||||||||||||||||||| |||  ||    
T  50516488 gagaaagaagaataacacaggagagttatcctggttccccaaacccgactacttccagtccccacacttcgtgtgagattatccactatagtattccgtt 50516587  T
Q  103 gctaacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttg 202  Q
    | |   ||||| |||| || | ||||| ||  |||||||||||||||||||||||||||||  ||||||||| |||||||||||||  ||||||||||||    
T  50516588 ggt---agaaatttctaaccaacactataaggtcttgatcacaccagatcagtccgtaacccttgtattatcaacctcagcaggctgttacaattctttg 50516684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 30 - 200
Target Start/End: Complemental strand, 23623088 - 23622919
Alignment:
Q  30 ttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttctgactagcacta 129  Q
    |||||||||||| || || |||||||| ||||||||||||||  |||||||||||||||||||||| | || ||||| ||||||||||||| ||||||||    
T  23623088 ttatcctggttcgcctaa-ccggctacgtccagtccccacactacgtgtgagattatccactatag-tatcctgctatcagaaacttctgaatagcacta 23622991  T
Q  130 caatttcttgatcacaccagatcagtccgtaac-ctctgtattatccacctcagcaggcttatacaattctt 200  Q
     ||| | |||||||||||||||||||| || || |||||||||||| |||||||||||||| ||| ||||||    
T  23622990 taatatgttgatcacaccagatcagtctgttacactctgtattatcaacctcagcaggcttctacgattctt 23622919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 25 - 203
Target Start/End: Complemental strand, 11482492 - 11482315
Alignment:
Q  25 gagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttc--ttgctaacagaaacttctgact 122  Q
    ||||||||||||||||  ||||| ||||||||||| ||||||||||| |||||||||||||||||||||||| | |  ||| |   |||||||||| ||     
T  11482492 gagagttatcctggttgtccaaacccggctacttctagtccccacacttcgtgtgagattatccactatagtatacagttggt---agaaacttctaacc 11482396  T
Q  123 agcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgc 203  Q
    | ||||| ||  |||| ||||||||| |||||||||||||| |||||||||| |||||||| ||||| |||||||||||||    
T  11482395 aacactataaggtctttatcacaccatatcagtccgtaacccctgtattatcaacctcagccggcttctacaattctttgc 11482315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 18125411 - 18125514
Alignment:
Q  14 gaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaa 113  Q
    |||| ||||| |||| |||||||||||||  |||||||| || || | ||| |||||||||||||||||||||||| ||||| | || |||||||| |||    
T  18125411 gaatgacacaagagatttatcctggttcattaaatccggttattttcggtctccacacctcgtgtgagattatccattatag-tatcctgctaacaaaaa 18125509  T
Q  114 cttct 118  Q
    |||||    
T  18125510 cttct 18125514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 200
Target Start/End: Original strand, 16489947 - 16490025
Alignment:
Q  123 agcactacaatttcttgatcacaccagatcagtccgtaac-ctctgtattatccacctcagcaggcttatacaattctt 200  Q
    ||||||| ||||| |||||||||||| ||||||| || || ||| |||||||| |||||||||| ||| ||| ||||||    
T  16489947 agcactataatttgttgatcacaccatatcagtctgttacactcagtattatcaacctcagcagacttctacgattctt 16490025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 5 - 249
Target Start/End: Original strand, 24794536 - 24794780
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 104  Q
    |||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24794536 gagagagaagaataacacaggagagttatcctggttcaccaaacccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 24794635  T
Q  105 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgca 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  24794636 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatcaacctcagcaggcttatacaattctttgca 24794735  T
Q  205 cactagcaaaagaaaggttgaaattttctatctcaaaactattaa 249  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  24794736 cactagcaaaagaaaggttggaattttctatctcaaaactattaa 24794780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 5 - 249
Target Start/End: Original strand, 28367643 - 28367887
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 104  Q
    |||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28367643 gagagagaagaataacacaggagagttatcctggttcaccaaacccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 28367742  T
Q  105 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgca 204  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28367743 taacagaaacttctgactagcactacaatatcttgatcacaccagatcagtccgtaacctctgtattatcaacctcagcaggcttatacaattctttgca 28367842  T
Q  205 cactagcaaaagaaaggttgaaattttctatctcaaaactattaa 249  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  28367843 cactagcaaaagaaaggttggaattttctatctcaaaactattaa 28367887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 5 - 249
Target Start/End: Original strand, 28375461 - 28375705
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 104  Q
    |||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28375461 gagagagaagaataacacaggagagttatcctggttcaccaaacccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 28375560  T
Q  105 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgca 204  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28375561 taacagaaacttctgactagcactacaatatcttgatcacaccagatcagtccgtaacctctgtattatcaacctcagcaggcttatacaattctttgca 28375660  T
Q  205 cactagcaaaagaaaggttgaaattttctatctcaaaactattaa 249  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  28375661 cactagcaaaagaaaggttggaattttctatctcaaaactattaa 28375705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 5 - 249
Target Start/End: Original strand, 28383283 - 28383527
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 104  Q
    |||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28383283 gagagagaagaataacacaggagagttatcctggttcaccaaacccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 28383382  T
Q  105 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgca 204  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28383383 taacagaaacttctgactagcactacaatatcttgatcacaccagatcagtccgtaacctctgtattatcaacctcagcaggcttatacaattctttgca 28383482  T
Q  205 cactagcaaaagaaaggttgaaattttctatctcaaaactattaa 249  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  28383483 cactagcaaaagaaaggttggaattttctatctcaaaactattaa 28383527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 5 - 249
Target Start/End: Original strand, 28351710 - 28351954
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 104  Q
    |||||||| |||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28351710 gagagagaagaataacacaggagagttatgctggttcaccaaacccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 28351809  T
Q  105 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgca 204  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  28351810 taacagaaacttctgactagcactacaatatcttgatcacaccagatcagtccgtaacctctgtattatcaaccttagcaggcttatacaattctttgca 28351909  T
Q  205 cactagcaaaagaaaggttgaaattttctatctcaaaactattaa 249  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  28351910 cactagcaaaagaaaggttggaattttctatctcaaaactattaa 28351954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 5 - 249
Target Start/End: Original strand, 38529167 - 38529411
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 104  Q
    |||||||| |||||| ||| |||||||||| | |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  38529167 gagagagaggaataatacaggagagttatcatagttcaccaaacccggctacttccagtgcccacacctcgtgtgagattatccactatagttgtcttgc 38529266  T
Q  105 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgca 204  Q
    ||||||||| ||||||||||||||| ||  ||||||||||||||||| |||| || ||   ||||||||| ||||||| |||||| ||||||||||||||    
T  38529267 taacagaaatttctgactagcactataagatcttgatcacaccagatgagtctgttacacttgtattatcaacctcagtaggcttctacaattctttgca 38529366  T
Q  205 cactagcaaaagaaaggttgaaattttctatctcaaaactattaa 249  Q
    |||||||||||||||||||| |||||||||||||||||| |||||    
T  38529367 cactagcaaaagaaaggttggaattttctatctcaaaacgattaa 38529411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 5 - 241
Target Start/End: Complemental strand, 4951791 - 4951555
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 104  Q
    |||||| | ||||||||||||||||||||| ||||||||||||  || ||||||| ||||| |||||||||||||||||||||||||||| || ||||||    
T  4951791 gagagataagaataacacatgagagttatcttggttcaccaaactcgactacttcaagtcctcacacctcgtgtgagattatccactatatttgtcttgc 4951692  T
Q  105 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgca 204  Q
    ||||||||| ||||||||||||||||||  | ||| |||||||||||||||| || ||  |||||||||| |||||| ||| ||| ||||||||||| ||    
T  4951691 taacagaaatttctgactagcactacaaggtattggtcacaccagatcagtctgttacacctgtattatcaacctcaacagccttctacaattctttaca 4951592  T
Q  205 cactagcaaaagaaaggttgaaattttctatctcaaa 241  Q
    |||||||||||||||||||||||||||||||||||||    
T  4951591 cactagcaaaagaaaggttgaaattttctatctcaaa 4951555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 5385874 - 5385690
Alignment:
Q  18 aacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttc 117  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| | |  ||| | |||||||||    
T  5385874 aacacaggagagttatcctggttcaccaaacccggctacttccagtccccacacttcgtgtgagattatccactatagtatac-agctgatagaaacttc 5385776  T
Q  118 tgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgc 203  Q
    | || | ||||| ||  |||||||||||||||||||||  |||||| |||||| ||| |||||||||||||| |||||||||||||    
T  5385775 taaccaacactataaggtcttgatcacaccagatcagtatgtaaccactgtatcatcaacctcagcaggcttctacaattctttgc 5385690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 15 - 203
Target Start/End: Original strand, 13328278 - 13328465
Alignment:
Q  15 aataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttc--ttgctaacagaa 112  Q
    ||||||||| |||||||||| |||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||| | |  ||| |   ||||    
T  13328278 aataacacaggagagttatcttggttcaccaaacccgactacttccagtccccacacttcgtgtgagattatccactatagtatacagttggt---agaa 13328374  T
Q  113 acttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgc 203  Q
    |||||| || | |||||  |  |||||||||||||||||||||||||||||  ||||||||| ||||||||| |||| |||||||||||||    
T  13328375 acttctaaccaacactattaggtcttgatcacaccagatcagtccgtaacccttgtattatcaacctcagcaagcttctacaattctttgc 13328465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 30 - 200
Target Start/End: Original strand, 17529877 - 17530046
Alignment:
Q  30 ttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttctgactagcacta 129  Q
    |||||||||||| || || |||||||| ||||||||||||||  ||||||||||||||||||||||| | || |||| ||||||||||||| ||||||||    
T  17529877 ttatcctggttcgcctaa-ccggctacgtccagtccccacactacgtgtgagattatccactatagtatcct-gctatcagaaacttctgaatagcacta 17529974  T
Q  130 caatttcttgatcacaccagatcagtccgtaac-ctctgtattatccacctcagcaggcttatacaattctt 200  Q
     ||| | ||||||||||||||||||||||| || |||||||||||| |||||||||||||| ||| ||||||    
T  17529975 taatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 17530046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 5 - 203
Target Start/End: Original strand, 46305565 - 46305760
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttc--tt 102  Q
    |||||||| |||||||||| |||||||||| ||||||| |||| ||||||||||||||||||||||| |||| |||||||||||||| |||| | |  ||    
T  46305565 gagagaga-gaataacacaggagagttatcttggttcatcaaacccggctacttccagtccccacacttcgt-tgagattatccactttagtatacagtt 46305662  T
Q  103 gctaacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttg 202  Q
    | ||   ||||||||| || | ||||| ||  |||||||||||||||||||||| |||||| |||||||||| |||||||||||||| ||||||||||||    
T  46305663 ggta---gaaacttctaaccaacactataaggtcttgatcacaccagatcagtctgtaaccactgtattatcaacctcagcaggcttctacaattctttg 46305759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 5 - 203
Target Start/End: Complemental strand, 23487240 - 23487041
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttcca--gtccccacacctcgtgtgagattatccactatagttttc-- 100  Q
    |||| ||| |||||||||| ||||||||||||||||||||||  |||| ||||||||  |||||||||  |||||||||||||||||||||||| |||      
T  23487240 gagaaagaagaataacacaggagagttatcctggttcaccaatcccggttacttccacagtccccacatttcgtgtgagattatccactatagtattcag 23487141  T
Q  101 ttgctaacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctt 200  Q
    ||| ||   ||||||||| || | ||||| ||  |||||||||||||||||||||| ||||||  ||||||||| |||||||||||||| ||||||||||    
T  23487140 ttggta---gaaacttctaaccaacactataaggtcttgatcacaccagatcagtctgtaacccttgtattatcaacctcagcaggcttctacaattctt 23487044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 30 - 200
Target Start/End: Complemental strand, 32878039 - 32877870
Alignment:
Q  30 ttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttctgactagcacta 129  Q
    |||||||||||| || || |||||||| ||||||||||||||  |||||||||||||||||||||| | || ||||| || |||||||||| || |||||    
T  32878039 ttatcctggttcgcctaa-ccggctacgtccagtccccacactacgtgtgagattatccactatag-tatcatgctatcataaacttctgaataacacta 32877942  T
Q  130 caatttcttgatcacaccagatcagtccgtaac-ctctgtattatccacctcagcaggcttatacaattctt 200  Q
     ||||| |||||||||||||||||||| || || |||||||||||| |||||||||||||| ||| ||||||    
T  32877941 taatttgttgatcacaccagatcagtctgttacactctgtattatcaacctcagcaggcttctacgattctt 32877870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 30 - 200
Target Start/End: Complemental strand, 54624824 - 54624655
Alignment:
Q  30 ttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttctgactagcacta 129  Q
    |||||||||||| || || |||||||| ||||||||||||||  |||||||||||||||||||||| | || ||||| ||||||||||||| ||||||||    
T  54624824 ttatcctggttcgcctaa-ccggctacgtccagtccccacactacgtgtgagattatccactatag-tatcctgctatcagaaacttctgaatagcacta 54624727  T
Q  130 caatttcttgatcacaccagatcagtccgtaac-ctctgtattatccacctcagcaggcttatacaattctt 200  Q
     ||| | ||||||| |||||||||||| || || |||||||||||| |||||||||||||| ||| ||||||    
T  54624726 taatatgttgatcataccagatcagtctgttacactctgtattatcaacctcagcaggcttctacgattctt 54624655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 30 - 200
Target Start/End: Complemental strand, 48978835 - 48978670
Alignment:
Q  30 ttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttctgactagcacta 129  Q
    |||||||||||| || || |||||||| ||||||||||||||  ||||||||||||||||||||||| | | |     ||||||||||||| ||||||||    
T  48978835 ttatcctggttcgcctaa-ccggctacgtccagtccccacactacgtgtgagattatccactatagtatccat-----cagaaacttctgaatagcacta 48978742  T
Q  130 caatttcttgatcacaccagatcagtccgtaac-ctctgtattatccacctcagcaggcttatacaattctt 200  Q
     ||| | ||||||||||||||||||||||| || |||||||||||| |||||||||||||| ||| ||||||    
T  48978741 taatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 48978670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 30 - 200
Target Start/End: Complemental strand, 48988375 - 48988210
Alignment:
Q  30 ttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttctgactagcacta 129  Q
    |||||||||||| || || |||||||| ||||||||||||||  ||||||||||||||||||||||| | | |     ||||||||||||| ||||||||    
T  48988375 ttatcctggttcgcctaa-ccggctacgtccagtccccacactacgtgtgagattatccactatagtatccat-----cagaaacttctgaatagcacta 48988282  T
Q  130 caatttcttgatcacaccagatcagtccgtaac-ctctgtattatccacctcagcaggcttatacaattctt 200  Q
     ||| | ||||||||||||||||||||||| || |||||||||||| |||||||||||||| ||| ||||||    
T  48988281 taatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 48988210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 99 - 201
Target Start/End: Original strand, 7784091 - 7784194
Alignment:
Q  99 tcttgctaacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaac-ctctgtattatccacctcagcaggcttatacaatt 197  Q
    |||||||||||||||||| |||||| ||||| ||  |||||||||||||||||||||| || || | |||||||||| |||||||||||||| |||||||    
T  7784091 tcttgctaacagaaacttatgactaacactataaggtcttgatcacaccagatcagtctgttacaccctgtattatcaacctcagcaggcttctacaatt 7784190  T
Q  198 cttt 201  Q
    ||||    
T  7784191 cttt 7784194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 7783988 - 7784089
Alignment:
Q  14 gaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaa 113  Q
    |||||||||| ||||  | | ||||||||||||| | | ||||||||||| |||||||| | ||||||||||||||||| |||| |||||||||||||||    
T  7783988 gaataacacaggagaactgttctggttcaccaaacctgactacttccagttcccacaccacatgtgagattatccactacagttgtcttgctaacagaaa 7784087  T
Q  114 ct 115  Q
    ||    
T  7784088 ct 7784089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 156
Target Start/End: Complemental strand, 19388936 - 19388809
Alignment:
Q  30 ttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc--taacagaaacttctgactagcac 127  Q
    ||||||||||||||||||  |||||||||| ||||||||||| ||||||||||||||| |||||||| |||  ||  || || |||||||||| ||||||    
T  19388936 ttatcctggttcaccaaaatcggctacttcaagtccccacacttcgtgtgagattatcgactatagtattc-agctatatcataaacttctgaatagcac 19388838  T
Q  128 tacaatttcttgatcacaccagatcagtc 156  Q
    || || || ||||| |||||| |||||||    
T  19388837 tataagttgttgatgacaccatatcagtc 19388809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 4361515 - 4361618
Alignment:
Q  14 gaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaa 113  Q
    |||| ||||| |||| |||||||||||||  |||||||| || || | ||| |||||||||||||||||||||||| ||||| | || |||||||| |||    
T  4361515 gaatgacacaagagatttatcctggttcattaaatccggttattttcggtctccacacctcgtgtgagattatccattatag-tatcctgctaacaaaaa 4361613  T
Q  114 cttct 118  Q
    |||||    
T  4361614 cttct 4361618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 24285537 - 24285493
Alignment:
Q  52 gctacttccagtccccacacctcgtgtgagattatccactatagt 96  Q
    |||||||||| |||| |||| ||||||||||||||||||||||||    
T  24285537 gctacttccactccctacacttcgtgtgagattatccactatagt 24285493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 5 - 249
Target Start/End: Original strand, 94422 - 94665
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 104  Q
    |||||||| |||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  94422 gagagaga-gaataacacaggagagttatcctggttcactaaacccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 94520  T
Q  105 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgca 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  94521 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatcaacctcagcaggcttatacaattctttgca 94620  T
Q  205 cactagcaaaagaaaggttgaaattttctatctcaaaactattaa 249  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  94621 cactagcaaaagaaaggttggaattttctatctcaaaactattaa 94665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 5 - 249
Target Start/End: Original strand, 103863 - 104106
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 104  Q
    |||||||| |||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  103863 gagagaga-gaataacacaggagagttatcctggttcaccaaacccggctaattccagtccccacacctcgtgtgagattatccactatagttttcttgc 103961  T
Q  105 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgca 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  103962 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatcaacctcagcaggcttatacaattctttgca 104061  T
Q  205 cactagcaaaagaaaggttgaaattttctatctcaaaactattaa 249  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  104062 cactagcaaaagaaaggttggaattttctatctcaaaactattaa 104106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 5 - 249
Target Start/End: Original strand, 23895606 - 23895850
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 104  Q
    |||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23895606 gagagagaagaataacacaggagagttatcctggttcaccaaacccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 23895705  T
Q  105 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgca 204  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||  |||||||||| |||||||||||||||||||||||||||||    
T  23895706 taacagaaacttctgactagcactacaatatcttgatcacaccagatcagtccgttacacctgtattatcaacctcagcaggcttatacaattctttgca 23895805  T
Q  205 cactagcaaaagaaaggttgaaattttctatctcaaaactattaa 249  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  23895806 cactagcaaaagaaaggttggaattttctatctcaaaactattaa 23895850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 5 - 249
Target Start/End: Complemental strand, 18420749 - 18420505
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 104  Q
    |||||||| |||||||||| || |||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  18420749 gagagagaagaataacacaggatagttatcctggttcacaaaacccggctacttccagtcccgacacctcgtgtgagattatacactatagttttcttgc 18420650  T
Q  105 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgca 204  Q
    |||||||||||||||||||||||||  |  ||||||||||||||||||||||||| ||  |||||||||| |||||||||||||||||||||||||||||    
T  18420649 taacagaaacttctgactagcactaacaaatcttgatcacaccagatcagtccgttacacctgtattatcaacctcagcaggcttatacaattctttgca 18420550  T
Q  205 cactagcaaaagaaaggttgaaattttctatctcaaaactattaa 249  Q
    || ||||||||||||||||| ||||||||||||| ||||||||||    
T  18420549 caatagcaaaagaaaggttggaattttctatctccaaactattaa 18420505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 5 - 203
Target Start/End: Complemental strand, 22066489 - 22066293
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttc--tt 102  Q
    |||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| | |  ||    
T  22066489 gagagaga-gaataacacaggagagttatcctggttcaccaaacccggctacttccagtccccacacttcgtgtgagattatccactatagtatgcagtt 22066391  T
Q  103 gctaacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttg 202  Q
    | |   |||||||||| || | ||||| ||  |||||||||||| |||||||||||||||| |||||||||| |||||||||||||| ||||||||||||    
T  22066390 ggt---agaaacttctaaccaacactataaggtcttgatcacactagatcagtccgtaaccactgtattatcaacctcagcaggcttctacaattctttg 22066294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 23884677 - 23884492
Alignment:
Q  17 taacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttc--ttgctaacagaaac 114  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||| | |  ||| |   ||||||    
T  23884677 taacacaggagagttatcctggttcaccaaacccggctacttccagtccccacacttcgtgtgagattgtccactatagtatgcagttggt---agaaac 23884581  T
Q  115 ttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgc 203  Q
    |||| || | ||||| ||  ||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||    
T  23884580 ttctaaccaacactataaggtcttgatcacaccagatcagtccgtaaccactgtattatcaacctcagcaggcttctacaattctttgc 23884492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 30 - 201
Target Start/End: Complemental strand, 14102480 - 14102308
Alignment:
Q  30 ttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttctgactagcacta 129  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||     
T  14102480 ttatcctggttcaccaaacccggctacttccagtccccacacctcttgtgagattatccactatagttgtcttgctaacagaaacttttgactagcactg 14102381  T
Q  130 caatttcttgatcacaccagatcagtccgtaac-ctctgtattatccacctcagcaggcttatacaattcttt 201  Q
     ||  ||||||||||| |||||||| | || || | |||||||||  |||||||||| ||| |||||||||||    
T  14102380 taaggtcttgatcacaacagatcagcctgttacaccctgtattattaacctcagcagacttctacaattcttt 14102308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 15 - 159
Target Start/End: Original strand, 10259779 - 10259922
Alignment:
Q  15 aataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaac 114  Q
    ||||||||| |||| |||| |||||||||||||||| |||||||||||||| ||||| ||||||| |||| |||||||||| | || |||||| ||||||    
T  10259779 aataacacaggagaattattctggttcaccaaatccagctacttccagtcctcacacttcgtgtgggattctccactatag-tatcctgctaagagaaac 10259877  T
Q  115 ttctgactagcactacaatttcttgatcacaccagatcagtccgt 159  Q
    ||||||||||||||| || ||||||||||||||||||||||||||    
T  10259878 ttctgactagcactataaattcttgatcacaccagatcagtccgt 10259922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 15 - 156
Target Start/End: Original strand, 11421451 - 11421591
Alignment:
Q  15 aataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaac 114  Q
    ||||||||| || | ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | || || ||||| |||     
T  11421451 aataacacaagataattatcctagttcatcaaatccggctacttccagtccccacacctcgtgtgagattatccactatag-tatcatgttaacaaaaaa 11421549  T
Q  115 ttctgactagcactacaatttcttgatcacaccagatcagtc 156  Q
    ||||||||| ||||| ||  ||||||||||||||||||||||    
T  11421550 ttctgactaacactataagatcttgatcacaccagatcagtc 11421591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 202
Target Start/End: Original strand, 17512213 - 17512408
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttc--tt 102  Q
    |||| ||| ||||||||||  ||||||||||||||||||||||  ||||||||| |||||||||||| || ||||||||||||||||||||| | |  ||    
T  17512213 gagaaagaagaataacacagaagagttatcctggttcaccaaactcggctactttcagtccccacacttcttgtgagattatccactatagtatacagtt 17512312  T
Q  103 gctaacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttg 202  Q
    | |   |||||||||| || | ||||| ||  |||||||||||| ||||||||| |||||| |||||||||| |||| ||||||||| ||||||||||||    
T  17512313 ggt---agaaacttctaaccaacactataaagtcttgatcacactagatcagtctgtaacc-ctgtattatcaaccttagcaggcttctacaattctttg 17512408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 14 - 155
Target Start/End: Complemental strand, 12173609 - 12173469
Alignment:
Q  14 gaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaa 113  Q
    ||||||||| ||||| ||||| | ||||||||||  ||||||||| |||||||||||||| |||| |||||||||||||||| | || ||||||||||||    
T  12173609 gaataacacctgagatttatcatagttcaccaaactcggctactttcagtccccacaccttgtgtaagattatccactatag-tatcatgctaacagaaa 12173511  T
Q  114 cttctgactagcactacaatttcttgatcacaccagatcagt 155  Q
    ||| |||||||||| | || ||||||||||||||||||||||    
T  12173510 cttatgactagcaccataaattcttgatcacaccagatcagt 12173469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 38 - 156
Target Start/End: Original strand, 23110242 - 23110359
Alignment:
Q  38 gttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttctgactagcactacaatttct 137  Q
    |||||| ||| || ||||||||||||||||||||| ||||| ||||||||||||||||| |||  ||||||||||||||||||||||||||| |  ||||    
T  23110242 gttcacgaaaaccagctacttccagtccccacaccccgtgttagattatccactatagtattc-ggctaacagaaacttctgactagcactatatgttct 23110340  T
Q  138 tgatcacaccagatcagtc 156  Q
    |||||||||||||| ||||    
T  23110341 tgatcacaccagataagtc 23110359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 200
Target Start/End: Complemental strand, 12415190 - 12415064
Alignment:
Q  74 cgtgtgagattatccactatagttttcttgctaacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaac-ctctgtatta 172  Q
    |||||||||||||||| |||||| | ||   || ||||||||||| | |||||||| |||   ||||||||||||||||||||||| || ||||||||||    
T  12415190 cgtgtgagattatccattatagtatcctct-tatcagaaacttcttaatagcactataataagttgatcacaccagatcagtccgttacactctgtatta 12415092  T
Q  173 tccacctcagcaggcttatacaattctt 200  Q
    |  |||  ||||||||| ||| ||||||    
T  12415091 ttaaccatagcaggcttctacgattctt 12415064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 196
Target Start/End: Complemental strand, 13218453 - 13218359
Alignment:
Q  102 tgctaacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaat 196  Q
    ||||||||||||||| ||||||| |||| ||  | |||||||||||||| |||| || || | || ||||||| |||||| || |||||||||||    
T  13218453 tgctaacagaaacttttgactagaactataaggtattgatcacaccagaccagttcggaatcactatattatcaacctcaacaagcttatacaat 13218359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 14 - 249
Target Start/End: Complemental strand, 3722 - 3487
Alignment:
Q  14 gaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaa 113  Q
    |||||||||| |||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3722 gaataacacaggagaattattctggttcaccaaacccggctacttccagtccccacacctcgtgtgagattatccactatagttgtcttgctaacagaaa 3623  T
Q  114 cttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgcacactagcaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3622 cttctgactagcactacaatttcttgatcacaccagatcagtctgtaacctctgtattatcaacctcagcaggcttatacaattctttgcacactagcaa 3523  T
Q  214 aagaaaggttgaaattttctatctcaaaactattaa 249  Q
    ||||||||||| ||||||||||||||||||||||||    
T  3522 aagaaaggttggaattttctatctcaaaactattaa 3487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 14 - 249
Target Start/End: Original strand, 7789077 - 7789312
Alignment:
Q  14 gaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaa 113  Q
    |||||||||| |||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  7789077 gaataacacaggagaattattctggttcaccaaacccggctacttccagtccccacacctcgtgtgagattatccactatagttgtcttgctaacagaaa 7789176  T
Q  114 cttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgcacactagcaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7789177 cttctgactagcactacaatttcttgatcacaccagatcagtctgtaacctctgtattatcaacctcagcaggcttatacaattctttgcacactagcaa 7789276  T
Q  214 aagaaaggttgaaattttctatctcaaaactattaa 249  Q
    ||||||||||| ||||||||||||||||||||||||    
T  7789277 aagaaaggttggaattttctatctcaaaactattaa 7789312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 5 - 249
Target Start/End: Complemental strand, 20714267 - 20714023
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 104  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||    
T  20714267 gagagagaagaataacacatgagagttatcctggttcaccaaacccggctacttccagtccccacacctcgtgtgacattatccattatagttgtcttgc 20714168  T
Q  105 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgca 204  Q
    ||||||||||||||||||||||||| ||  |||||||||||||||||||||| || ||  |||||||||| |||||||||||||| ||||||||||||||    
T  20714167 taacagaaacttctgactagcactataagatcttgatcacaccagatcagtctgttacacctgtattatcaacctcagcaggcttctacaattctttgca 20714068  T
Q  205 cactagcaaaagaaaggttgaaattttctatctcaaaactattaa 249  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  20714067 cactagcaaaagaaaggttggaattttctatctcaaaactattaa 20714023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 15 - 241
Target Start/End: Original strand, 25051063 - 25051287
Alignment:
Q  15 aataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttc--ttgctaacagaa 112  Q
    ||||||||| |||||||||| ||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||| |||  ||| ||   |||    
T  25051063 aataacacaagagagttatcttggttcacccaatctggctacttccagtccccacacttcgtgtgagattatccactatagtattcagttggta---gaa 25051159  T
Q  113 acttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggctt-atacaattctttgcacactagc 211  Q
    |||||| || | ||||| ||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||  ||||||||||||  |||||||    
T  25051160 acttctaaccaacactataatgtcttgatcacaccagatcagtctgtaacctctgtattatcaacctcagcaggcttcttacaattctttg--cactagc 25051257  T
Q  212 aaaagaaaggttgaaattttctatctcaaa 241  Q
    ||||||||||||| ||||||||||||||||    
T  25051258 aaaagaaaggttggaattttctatctcaaa 25051287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 18883163 - 18883384
Alignment:
Q  18 aacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttc--ttgctaacagaaact 115  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||  ||| |   ||||| |    
T  18883163 aacacaggagagttatcctggttcaccaaatccggctacttccagtccccacacttcgtgtgagattatccactatagtattcagttggt---agaaaat 18883259  T
Q  116 tctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggctt-atacaattctttgcacactagcaaa 214  Q
    ||| || | ||||| ||  ||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||  ||||||||||||  ||||||||||    
T  18883260 tctaaccaacactataaagtcttgatcacaccagatcagttcgtaccctctgtattatcaacctcagcaggcttcttacaattctttg--cactagcaaa 18883357  T
Q  215 agaaaggttgaaattttctatctcaaa 241  Q
    |||||||||| ||||||||||||||||    
T  18883358 agaaaggttggaattttctatctcaaa 18883384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 15 - 241
Target Start/End: Original strand, 25037026 - 25037250
Alignment:
Q  15 aataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttc--ttgctaacagaa 112  Q
    ||||||||| |||||||||| ||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||| |||  ||| ||   |||    
T  25037026 aataacacaagagagttatcttggttcacccaatctggctacttccagtccccacacttcgtgtgagattatccactatagtattcagttggta---gaa 25037122  T
Q  113 acttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggctt-atacaattctttgcacactagc 211  Q
    |||||| || | ||||| ||  |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||  ||||||||||||  |||||||    
T  25037123 acttctaaccaacactataaagtcttgatcacaccagatcagtctgtaacctctgtattatcaacctcagcaggcttcttacaattctttg--cactagc 25037220  T
Q  212 aaaagaaaggttgaaattttctatctcaaa 241  Q
    ||||||||||||| ||||||||||||||||    
T  25037221 aaaagaaaggttggaattttctatctcaaa 25037250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 25 - 241
Target Start/End: Complemental strand, 18233104 - 18232890
Alignment:
Q  25 gagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttctgactag 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||  | |  ||||||||||| |  |     
T  18233104 gagagttatcctggttcaccaaatccggctacttccagtccccacacttcgtgtgagattatccactatagtattc-agttggcagaaacttctaatcaa 18233006  T
Q  125 cactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggctt-atacaattctttgcacactagcaaaagaaaggtt 223  Q
    ||||||||  ||||||||||||| |||||||  ||||||||||||||||| ||||||||||| ||  ||||||||||||  |||||||||||||||||||    
T  18233005 cactacaacgtcttgatcacacccgatcagtttgtaacctctgtattatcaacctcagcaggattcttacaattctttg--cactagcaaaagaaaggtt 18232908  T
Q  224 gaaattttctatctcaaa 241  Q
    | ||||||||||||||||    
T  18232907 ggaattttctatctcaaa 18232890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 25 - 241
Target Start/End: Complemental strand, 18242555 - 18242341
Alignment:
Q  25 gagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttctgactag 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||  | |  ||||||||||| |  |     
T  18242555 gagagttatcctggttcaccaaatccggctacttccagtccccacacttcgtgtgagattatccactatagtattc-agttggcagaaacttctaatcaa 18242457  T
Q  125 cactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggctt-atacaattctttgcacactagcaaaagaaaggtt 223  Q
    ||||||||  ||||||||||||| |||||||  ||||||||||||||||| ||||||||||| ||  ||||||||||||  |||||||||||||||||||    
T  18242456 cactacaacgtcttgatcacacccgatcagtttgtaacctctgtattatcaacctcagcaggattcttacaattctttg--cactagcaaaagaaaggtt 18242359  T
Q  224 gaaattttctatctcaaa 241  Q
    | ||||||||||||||||    
T  18242358 ggaattttctatctcaaa 18242341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 14 - 241
Target Start/End: Original strand, 18143428 - 18143653
Alignment:
Q  14 gaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttc--ttgctaacaga 111  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||  ||| |||   |    
T  18143428 gaataacacaggagagttatcttggttcaccaaatccggctacttccagtccccacacttcgtgtgagattatccactatagcattcagttggtaa---a 18143524  T
Q  112 aacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggctt-atacaattctttgcacactag 210  Q
    ||||||| || | ||||| ||  |||||||||||||||||||||| ||||||  ||||||||| ||||||| ||||||  ||||||||||||  ||||||    
T  18143525 aacttctaaccaacactataaggtcttgatcacaccagatcagtctgtaacccttgtattatcaacctcagtaggcttcttacaattctttg--cactag 18143622  T
Q  211 caaaagaaaggttgaaattttctatctcaaa 241  Q
    |||||||||||||| ||||||||||||||||    
T  18143623 caaaagaaaggttggaattttctatctcaaa 18143653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 25 - 241
Target Start/End: Complemental strand, 18252006 - 18251792
Alignment:
Q  25 gagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttctgactag 124  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||  | |  ||||||||||| || |     
T  18252006 gagagttatcctgattcaccaaatccggctacttccagtccccacacttcgtgtgagattatccactatagtattca-gttggcagaaacttctaaccaa 18251908  T
Q  125 cactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggctt-atacaattctttgcacactagcaaaagaaaggtt 223  Q
    ||||| ||  ||||||||||||| |||||||  ||||||||||||||||| ||||||||||| ||  ||||||||||||  |||||||||||||||||||    
T  18251907 cactataacgtcttgatcacacccgatcagtttgtaacctctgtattatcaacctcagcaggattcttacaattctttg--cactagcaaaagaaaggtt 18251810  T
Q  224 gaaattttctatctcaaa 241  Q
    | ||||||||||||||||    
T  18251809 ggaattttctatctcaaa 18251792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 15 - 200
Target Start/End: Original strand, 31575411 - 31575595
Alignment:
Q  15 aataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaac 114  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||  ||||  ||||||    
T  31575411 aataacacaagagagttatcctggttcaccaaatccggctacttccagtccccacacttcgtgtgagattatccactatagtattc-agctagtagaaac 31575509  T
Q  115 ttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctt 200  Q
    |||| |||||||||| ||  |||||||||||||| ||||||||  |||| |||||||||| ||||||||| |||| ||||||||||    
T  31575510 ttctaactagcactataaggtcttgatcacaccaaatcagtccagaacccctgtattatcaacctcagcaagcttctacaattctt 31575595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 5 - 203
Target Start/End: Original strand, 42712168 - 42712365
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttc--tt 102  Q
    |||| ||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| | |  ||    
T  42712168 gagaaagaagaataacacaggagagttatcctggttcaccaaacccggctacttccagtccccacacttcgtgtgagattatccactatagtatgcagtt 42712267  T
Q  103 gctaacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttg 202  Q
    | |   |||||||||| || | ||||| ||  ||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||    
T  42712268 ggt---agaaacttctaaccaacactataaggtcttgatcacaccagatcagtccgtaaccactgtattatcaacctcagcaggcttctacaattctttg 42712364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 5 - 203
Target Start/End: Complemental strand, 20045015 - 20044818
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttc--tt 102  Q
    |||| ||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||| ||||| | |  ||    
T  20045015 gagaaagaagaataacacatgagagttatcctggttcaccaaacccggctacatccagtccccacacttcgtgtgagattatccacgatagtatacagtt 20044916  T
Q  103 gctaacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttg 202  Q
    | |   |||||||||| || | ||||| ||  ||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||    
T  20044915 ggt---agaaacttctaaccaacactataaggtcttgatcacaccagatcagtccgtaacccctgtattatcaacctcagcaggcttctacaattctttg 20044819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 5 - 203
Target Start/End: Complemental strand, 20030376 - 20030179
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttc--tt 102  Q
    |||| ||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| | |  ||    
T  20030376 gagaaagaagaataacacaagagagttatcctggttcaccaaacccggctacttccagtccccacacttcgtgtgagattatccactatagtatacagtt 20030277  T
Q  103 gctaacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttg 202  Q
    | |   | |||||||| || | ||||| ||  ||||||||||||||||||||||||||| | |||||||||| |||||||||||||| ||||||||||||    
T  20030276 ggt---ataaacttctaaccaacactataaggtcttgatcacaccagatcagtccgtaatccctgtattatcaacctcagcaggcttctacaattctttg 20030180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 5 - 202
Target Start/End: Complemental strand, 12925550 - 12925355
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttc--tt 102  Q
    |||||||| |||||||||| ||||||||||||||||||| ||| ||| ||||||||||||||||||| |||||||||||||||||||||||| | |  ||    
T  12925550 gagagaga-gaataacacaggagagttatcctggttcacgaaacccgactacttccagtccccacacttcgtgtgagattatccactatagtatgcagtt 12925452  T
Q  103 gctaacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttg 202  Q
    | |   |||||||||| || | ||||| ||  ||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||    
T  12925451 ggt---agaaacttctaaccaacactataaggtcttgatcacaccagatcagtccgtaaccactgtattatcaacctcagcaggcttctacaattctttg 12925355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 14 - 241
Target Start/End: Original strand, 4843721 - 4843948
Alignment:
Q  14 gaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttc--ttgctaacaga 111  Q
    |||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||  ||| |   |||    
T  4843721 gaataacaaaggagagttatcctggttcactaaatccggctacttccagtccccacacttcgtgtgagattatccactatagtattcagttggt---aga 4843817  T
Q  112 aacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacc--tctgtattatccacctcagcaggctt-atacaattctttgcacact 208  Q
    || |||| || |  |||| ||  |||||||||||||||||||||| ||||||  | | ||||||| |||||| |||||||  ||||||||||||  ||||    
T  4843818 aatttctaaccaagactataaggtcttgatcacaccagatcagtctgtaacccttgtatattatcaacctcatcaggcttcttacaattctttg--cact 4843915  T
Q  209 agcaaaagaaaggttgaaattttctatctcaaa 241  Q
    |||||||||||||||| ||||||||||||||||    
T  4843916 agcaaaagaaaggttggaattttctatctcaaa 4843948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 5 - 203
Target Start/End: Complemental strand, 12767830 - 12767631
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttcca--gtccccacacctcgtgtgagattatccactatagttttc-- 100  Q
    |||| ||| |||||||||| ||||||||||||||||||||||  |||| ||||||||  |||||||||  |||||||||||||||||||||||| |||      
T  12767830 gagaaagaagaataacacaggagagttatcctggttcaccaatcccggttacttccacagtccccacatttcgtgtgagattatccactatagtattcag 12767731  T
Q  101 ttgctaacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctt 200  Q
    ||| ||   ||||||||| || | ||||| ||  ||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||    
T  12767730 ttggta---gaaacttctaaccaacactataaggtcttgatcacaccagatcagtccgtaacccctgtattatcaacctcagcaggcttctacaattctt 12767634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 5 - 157
Target Start/End: Original strand, 33592124 - 33592275
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 104  Q
    ||||||||  ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |     
T  33592124 gagagagagaaataacacaggagagttatcctggttcacccaatccggctacttccagtccccacacttcgtgtgagattatccactatagttttc-agt 33592222  T
Q  105 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtcc 157  Q
    | ||||||||||||||| | ||||| ||  |||||||||||| ||||||||||    
T  33592223 tgacagaaacttctgaccaacactataaggtcttgatcacactagatcagtcc 33592275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 5 - 157
Target Start/End: Original strand, 33601763 - 33601914
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 104  Q
    ||||||||  ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |     
T  33601763 gagagagaaaaataacacaggagagttatcctggttcacccaatccggctacttccagtccccacacttcgtgtgagattatccactatagttttc-agt 33601861  T
Q  105 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtcc 157  Q
    | ||||||||||||||| | ||||| ||  |||||||||||| ||||||||||    
T  33601862 tgacagaaacttctgaccaacactataaggtcttgatcacactagatcagtcc 33601914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 15834137 - 15833950
Alignment:
Q  16 ataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaact 115  Q
    |||||||| |||| ||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||| | || ||||||| ||||||    
T  15834137 ataacacaagagatttatcttggttcaccaaatccggctactttcagtccacacacctcgtgtgagattatccattatag-tatcatgctaactgaaact 15834039  T
Q  116 tctgactagcactacaatttcttgatcacaccagatcagtccgtaac-ctctgtattatccacctcagcaggcttatacaattctttgc 203  Q
    |||||||||||||| || ||||||| || ||||||| ||| ||| || | |||||||||| || |||| ||| || |||||||||||||    
T  15834038 tctgactagcactataagttcttgaccataccagataagttcgttactccctgtattatcaacatcagtaggtttctacaattctttgc 15833950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 5 - 163
Target Start/End: Complemental strand, 12915655 - 12915499
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttc--tt 102  Q
    |||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| | |  ||    
T  12915655 gagagaga-gaataacacaggagagttatcctggttcaccaaacccggctacttccagtccccacacttcgtgtgagattatccactatagtatgcagtt 12915557  T
Q  103 gctaacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacc 163  Q
    | |   |||||||||| || | ||||| ||  |||||||||||||||||||||||||||||    
T  12915556 ggt---agaaacttctaaccaacactataaggtcttgatcacaccagatcagtccgtaacc 12915499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 157
Target Start/End: Original strand, 24096077 - 24096217
Alignment:
Q  17 taacacatgagagttatcctggttcaccaaatccggctacttccagtcccc-acacctcgtgtgagattatccactatagttttcttgctaacagaaact 115  Q
    ||||||| |||| |||| |||||||||||||  || ||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||| |||||    
T  24096077 taacacaggagatttattctggttcaccaaactcgactacttccagtcccccacacctcgtgtgagattatccactatagtat-cttgctaacataaact 24096175  T
Q  116 tctgactagcactacaatttcttgatcacaccagatcagtcc 157  Q
    | ||||||||||||||| |||||||| |||||| ||||||||    
T  24096176 tttgactagcactacaagttcttgattacaccatatcagtcc 24096217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 25 - 162
Target Start/End: Complemental strand, 24634145 - 24634009
Alignment:
Q  25 gagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttctgactag 124  Q
    |||||||||||||||||  |||| ||| ||||||||||||||||||| |||||||| ||||||||||||||| |||  ||||  |||||||||| |||||    
T  24634145 gagagttatcctggttcctcaaacccgactacttccagtccccacacttcgtgtgatattatccactatagtattc-agctagtagaaacttctaactag 24634047  T
Q  125 cactacaatttcttgatcacaccagatcagtccgtaac 162  Q
    ||||| ||  ||||||||||||||||||||||| ||||    
T  24634046 cactataaggtcttgatcacaccagatcagtccataac 24634009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 20714483 - 20714417
Alignment:
Q  14 gaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtga 80  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  20714483 gaataacacatgagagttatcctggttcaccaaacccggctacttccagtccccacacctcgtgtga 20714417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 40 - 157
Target Start/End: Original strand, 42896174 - 42896290
Alignment:
Q  40 tcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttctgactagcactacaatttcttg 139  Q
    ||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||  | | | |||||||||| || | ||||| ||  |||||    
T  42896174 tcacccaatccggctacttccagtctccacacttcgtgtgagattatccactatagatttc-agttgatagaaacttctaaccaacactataaggtcttg 42896272  T
Q  140 atcacaccagatcagtcc 157  Q
    ||||||||||||||||||    
T  42896273 atcacaccagatcagtcc 42896290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 26194048 - 26194106
Alignment:
Q  18 aacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgt 76  Q
    ||||||||||||||||||||||||| |||| ||  ||||||| ||||||||||| ||||    
T  26194048 aacacatgagagttatcctggttcatcaaacccaactacttctagtccccacacttcgt 26194106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 5 - 249
Target Start/End: Original strand, 30813 - 31057
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 104  Q
    |||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30813 gagagagaagaataacacaggagagttatcctggttcaccaaacccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 30912  T
Q  105 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgca 204  Q
    ||||||||||||||||||| ||||||||| | |||||||||||||||||||| |||||  |||||||||| |||||||||||||||||||||||||||||    
T  30913 taacagaaacttctgactaacactacaatattttgatcacaccagatcagtcagtaacacctgtattatcaacctcagcaggcttatacaattctttgca 31012  T
Q  205 cactagcaaaagaaaggttgaaattttctatctcaaaactattaa 249  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  31013 cactagcaaaagaaaggttggaattttctatctcaaaactattaa 31057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 5 - 241
Target Start/End: Complemental strand, 10239 - 10006
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 104  Q
    |||||||  ||||||||||||||||||||| ||||||||||||  |||||| |||||||||||||||| |||||||||||||||||||||||| ||||||    
T  10239 gagagaggggaataacacatgagagttatcttggttcaccaaacacggcta-ttccagtccccacaccccgtgtgagattatccactatagttgtcttgc 10141  T
Q  105 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgca 204  Q
    ||||||||||||||||||||||||| ||  ||| |||||||||||||||||| || ||  |||||||||| ||||||  |||||| ||||||||||||      
T  10140 taacagaaacttctgactagcactataaggtctagatcacaccagatcagtctgttacacctgtattatcaacctcaataggcttctacaattctttg-- 10043  T
Q  205 cactagcaaaagaaaggttgaaattttctatctcaaa 241  Q
    |||||| |||| ||| |||  ||||||||||||||||    
T  10042 cactagaaaaataaatgttagaattttctatctcaaa 10006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 5 - 249
Target Start/End: Complemental strand, 7593204 - 7592960
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 104  Q
    |||||||| |||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7593204 gagagagaagaataacacaagagagttatcctggttcaccaaacctggctacttccagtccccacacctcgtgtgagattatccattatagttttcttgc 7593105  T
Q  105 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgca 204  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||| |||||| ||||||||||||||||||||||    
T  7593104 taacagaaacttctgactagcactacaatatcttgatcacaccagatcagtccgtaacacctgtattatcaacctcatcaggcttatacaattctttgca 7593005  T
Q  205 cactagcaaaagaaaggttgaaattttctatctcaaaactattaa 249  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  7593004 cactagcaaaagaaaggttggaattttctatctcaaaactattaa 7592960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 5 - 249
Target Start/End: Complemental strand, 15174738 - 15174494
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 104  Q
    |||||||| |||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15174738 gagagagaagaataacacaggagatttatcctggttcaccaaacccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 15174639  T
Q  105 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgca 204  Q
    ||||| ||||||||||||||||||||||  ||||||||||||||||||||||||| ||  |||||||||| ||||||||||||||||| |||||||||||    
T  15174638 taacaaaaacttctgactagcactacaagatcttgatcacaccagatcagtccgttacacctgtattatcaacctcagcaggcttatataattctttgca 15174539  T
Q  205 cactagcaaaagaaaggttgaaattttctatctcaaaactattaa 249  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  15174538 cactagcaaaagaaaggttggaattttctatctcaaaactattaa 15174494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 25 - 241
Target Start/End: Original strand, 11634340 - 11634554
Alignment:
Q  25 gagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttctgactag 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||  | |  ||||||||||| || |     
T  11634340 gagagttatcctggttcaccaaatccggctacttccagtccccacacttcgtgtgagattatccactatagtattc-agttggcagaaacttctaaccaa 11634438  T
Q  125 cactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggctt-atacaattctttgcacactagcaaaagaaaggtt 223  Q
    ||||| ||  ||||||||||||| |||||||  ||||||||||||||||| ||||||||||||||  ||||||||||||  |||||||||||||||||||    
T  11634439 cactataacgtcttgatcacacccgatcagtttgtaacctctgtattatcaacctcagcaggcttcttacaattctttg--cactagcaaaagaaaggtt 11634536  T
Q  224 gaaattttctatctcaaa 241  Q
    | ||||||||||||||||    
T  11634537 ggaattttctatctcaaa 11634554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 14 - 203
Target Start/End: Original strand, 14634777 - 14634965
Alignment:
Q  14 gaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaa 113  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| | |  |||   |||||    
T  14634777 gaataacacaggagagttatcctggttcaccaaacccggctacttccagtccccacacttcgtgtgagattatccactatagtatgc-agctggtagaaa 14634875  T
Q  114 cttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgc 203  Q
    ||||| || | ||||| ||  ||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||    
T  14634876 cttctaaccaacactataaggtcttgatcacaccagatcagtccgtaaccactgtattatcaacctcagcaggcttctacaattctttgc 14634965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 5 - 203
Target Start/End: Original strand, 14644469 - 14644665
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttc--tt 102  Q
    |||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| | |  ||    
T  14644469 gagagaga-gaataacacaggagagttatcctggttcaccaaacccggctacttccagtccccacacttcgtgtgagattatccactatagtatgcagtt 14644567  T
Q  103 gctaacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttg 202  Q
    | |   |||||||||| || | ||||| ||  ||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||    
T  14644568 ggt---agaaacttctaaccaacactataaggtcttgatcacaccagatcagtccgtaaccactgtattatcaacctcagcaggcttctacaattctttg 14644664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 14 - 203
Target Start/End: Original strand, 33292176 - 33292364
Alignment:
Q  14 gaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttc--ttgctaacaga 111  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| | |  ||| |   |||    
T  33292176 gaataacacaggagagttatcctggttcaccaaacccggctacttccagtccccacacttcgtgtgagattatccactatagtatgcagttggt---aga 33292272  T
Q  112 aacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgc 203  Q
    ||||||| || | ||||| ||  ||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||    
T  33292273 aacttctaaccaacactataaggtcttgatcacaccagatcagtccgtaaccactgtattatcaacctcagcaggcttctacaattctttgc 33292364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 5 - 203
Target Start/End: Original strand, 15947364 - 15947560
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttc--tt 102  Q
    |||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||| | |  ||    
T  15947364 gagagaga-gaataacacaggagagttatcctggttcaccaaacccggctacttccagtcaccacacttcgtgtgagattatccactatagtatgcagtt 15947462  T
Q  103 gctaacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttg 202  Q
    | |   |||||||||| || | ||||| ||  ||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||    
T  15947463 ggt---agaaacttctaaccaacactataaggtcttgatcacaccagatcagtccgtaaccactgtattatcaacctcagcaggcttctacaattctttg 15947559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 5 - 202
Target Start/End: Complemental strand, 32818193 - 32817997
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttc--tt 102  Q
    |||| ||| |||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||| |||  ||    
T  32818193 gagaaagaagaataacacaggagagttatcctggttcaccaaacccggctacttccggtccccacacttcgtgtgagattatccactatagtattcagtt 32818094  T
Q  103 gctaacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttg 202  Q
    | |   |||||||||| || | ||||| ||  |||||||||||||||||||||| |||||| |||||||||| ||||| |||||||| ||||||| ||||    
T  32818093 ggt---agaaacttctaaccaacactataaggtcttgatcacaccagatcagtctgtaacccctgtattatcaacctccgcaggcttctacaattttttg 32817997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 5 - 203
Target Start/End: Complemental strand, 9737143 - 9736946
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 104  Q
    |||| ||| |||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||| |||||| |||  |     
T  9737143 gagaaagaagaataacacaggagagttatcctggttcactaaacccggctacttccagtccccacacttcgtgtgagattatccattatagtattc-agt 9737045  T
Q  105 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgc 203  Q
    |   |||||||||| || | ||||| ||   ||||||||||||||||||||| ||| || |||||||||| |||||||||||||| |||||||||||||    
T  9737044 ttgtagaaacttctaaccaacactataaggccttgatcacaccagatcagtctgtagcccctgtattatcaacctcagcaggcttctacaattctttgc 9736946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 15 - 201
Target Start/End: Original strand, 19352589 - 19352775
Alignment:
Q  15 aataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaac 114  Q
    ||||| ||| ||||||||| |||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||| | || |||||||||||||    
T  19352589 aataatacaggagagttatactggttcaccaaattcggctacttccagtcctcacacttcgtgtgagattatccactatag-tctcctgctaacagaaac 19352687  T
Q  115 ttctgactagcactacaatttcttgatcacaccagatcagtccgtaac-ctctgtattatccacctcagcaggcttatacaattcttt 201  Q
    |||||||| | |||| || ||| |||||||||||||||  ||||| || | |||||||||  |||||| ||||||| |||| ||||||    
T  19352688 ttctgacttgtactataaattcctgatcacaccagatctttccgttacaccctgtattatgaacctcatcaggcttctacacttcttt 19352775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 5 - 157
Target Start/End: Complemental strand, 13874582 - 13874432
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttc--tt 102  Q
    ||||||||  ||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||  ||    
T  13874582 gagagagagaaataacacaggagagttatcctggttcacccaatccg-ctacttccagtccccacacttcgtgtgagattatccactatagttttcagtt 13874484  T
Q  103 gctaacagaaacttctgactagcactacaatttcttgatcacaccagatcagtcc 157  Q
    | |   |||||||||| || | ||||| ||  |||||||||||||||||||||||    
T  13874483 ggt---agaaacttctaaccaacactataaggtcttgatcacaccagatcagtcc 13874432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 129
Target Start/End: Original strand, 48710006 - 48710121
Alignment:
Q  14 gaataacacatgagagttatcctggttcaccaaatccggctacttccagt-ccccacacctcgtgtgagattatccactatagttttcttgctaacagaa 112  Q
    |||||||||| ||||| ||| |||||||||||||  ||| |||||||||| |||||||| |||||||||||||||||||||||| |||  ||||  ||||    
T  48710006 gaataacacaggagagatattctggttcaccaaactcggatacttccagtcccccacacttcgtgtgagattatccactatagtattc-agctagtagaa 48710104  T
Q  113 acttctgactagcacta 129  Q
    |||||| ||||||||||    
T  48710105 acttctaactagcacta 48710121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 197
Target Start/End: Original strand, 4306573 - 4306739
Alignment:
Q  30 ttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttctgactagcacta 129  Q
    ||||||| |||||||||| || |||||||||||| ||||||| ||| |||||||| || ||||||| | ||   ||| ||||||||| ||| |||||||     
T  4306573 ttatcctagttcaccaaagccagctacttccagttcccacacttcgagtgagattttctactatag-tatccaactatcagaaacttatgaatagcact- 4306670  T
Q  130 caatttcttgatcacaccagatcagtccg--taacctctgtattatccacctcagcaggcttatacaatt 197  Q
     |  || ||||||||||||||||||||||  ||  |||||||||||| |||||||||| ||| |||||||    
T  4306671 -atgttgttgatcacaccagatcagtccgattacactctgtattatcaacctcagcagacttctacaatt 4306739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 48711401 - 48711469
Alignment:
Q  135 tcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgc 203  Q
    |||||||||||||| |||||| || |||   ||||||||| |||||| ||||||| || ||||||||||    
T  48711401 tcttgatcacaccatatcagttcggaacacatgtattatcaacctcaacaggcttctataattctttgc 48711469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 5 - 249
Target Start/End: Complemental strand, 408526 - 408282
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 104  Q
    |||||||| |||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  408526 gagagagaagaataacacaggagagttatcctggttcaccaaacccgtctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 408427  T
Q  105 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgca 204  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||  |||||||||| |||||  ||||||||||||||||||||||    
T  408426 taacagaaacttctgactagcactacaatatcttgatcacaccagattagtccgtaacacctgtattatcaacctcttcaggcttatacaattctttgca 408327  T
Q  205 cactagcaaaagaaaggttgaaattttctatctcaaaactattaa 249  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  408326 cactagcaaaagaaaggttggaattttctatctcaaaactattaa 408282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 5 - 245
Target Start/End: Original strand, 31710456 - 31710696
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 104  Q
    |||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31710456 gagagagaagaataacacatgagagttatccttgttcaccaaacccggctacttccagtccccacacctcgtgtgagattatccactatagttgtcttgc 31710555  T
Q  105 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgca 204  Q
    ||||||||||||||||||||||||| ||  ||||||||||||||||||||||||| ||  |||||||||| |||||||||| ||| ||||||||||||||    
T  31710556 taacagaaacttctgactagcactataagatcttgatcacaccagatcagtccgttacacctgtattatcaacctcagcagacttctacaattctttgca 31710655  T
Q  205 cactagcaaaagaaaggttgaaattttctatctcaaaacta 245  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  31710656 cactagcaaaagaaaggttggaattttctatctcaaaacta 31710696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 5 - 249
Target Start/End: Original strand, 24022732 - 24022976
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 104  Q
    |||||||| ||||||||   |||||||||||| |||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||    
T  24022732 gagagagaagaataacattggagagttatcctcgttcaccaaacccggctacttccaattcccacacctcgtgtgagattatccactatagttgtcttgc 24022831  T
Q  105 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgca 204  Q
    ||||||||||||||||||||||||| ||  ||||||||||||||||||||||||| ||  |||||||||| |||||| ||||||| ||||||||||||||    
T  24022832 taacagaaacttctgactagcactataagatcttgatcacaccagatcagtccgttacacctgtattatcaacctcaacaggcttctacaattctttgca 24022931  T
Q  205 cactagcaaaagaaaggttgaaattttctatctcaaaactattaa 249  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  24022932 cactagcaaaaggaaggttgaaattttctatctcaaaactattaa 24022976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 14 - 237
Target Start/End: Complemental strand, 14273393 - 14273170
Alignment:
Q  14 gaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaa 113  Q
    |||||||||| |||| |||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  14273393 gaataacacacgagaattatcctggttcaccaaacccggctactttcagtctccacacctcgtgtgagattatccactatagttgtcttgctaacagaaa 14273294  T
Q  114 cttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgcacactagcaa 213  Q
    |||||||||||||||| ||  |||| ||||||||| ||||||| || ||  || ||||||| |||||||||||||| |||||||||||||||||||||||    
T  14273293 cttctgactagcactataagatcttaatcacaccatatcagtctgttacacctatattatcaacctcagcaggcttctacaattctttgcacactagcaa 14273194  T
Q  214 aagaaaggttgaaattttctatct 237  Q
    |||||| |||| ||||||||||||    
T  14273193 aagaaatgttggaattttctatct 14273170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 14 - 203
Target Start/End: Complemental strand, 35877704 - 35877516
Alignment:
Q  14 gaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttc--ttgctaacaga 111  Q
    |||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| | |  ||| |   |||    
T  35877704 gaataacataggagagttatcctggttcaccaaacccggctacttccagtccccacacttcgtgtgagattatccactatagtatgcagttggt---aga 35877608  T
Q  112 aacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgc 203  Q
    ||||||| || | ||||| ||  ||||||||||||||||||||| ||||||| |||||||||| |||||||||||||| |||||||||||||    
T  35877607 aacttctaaccaacactataaggtcttgatcacaccagatcagttcgtaaccactgtattatcaacctcagcaggcttctacaattctttgc 35877516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 14 - 203
Target Start/End: Complemental strand, 35885193 - 35885005
Alignment:
Q  14 gaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttc--ttgctaacaga 111  Q
    |||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| | |  ||| |   |||    
T  35885193 gaataacataggagagttatcctggttcaccaaacccggctacttccagtccccacacttcgtgtgagattatccactatagtatgcagttggt---aga 35885097  T
Q  112 aacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgc 203  Q
    ||||||| || | ||||| ||  ||||||||||||||||||||| ||||||| |||||||||| |||||||||||||| |||||||||||||    
T  35885096 aacttctaaccaacactataaggtcttgatcacaccagatcagttcgtaaccactgtattatcaacctcagcaggcttctacaattctttgc 35885005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 14 - 203
Target Start/End: Complemental strand, 36724906 - 36724718
Alignment:
Q  14 gaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttc--ttgctaacaga 111  Q
    |||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| | |  ||| |   |||    
T  36724906 gaataacataggagagttatcctggttcaccaaacccggctacttccagtccccacacttcgtgtgagattatccactatagtatgcagttggt---aga 36724810  T
Q  112 aacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgc 203  Q
    ||||||| || | ||||| ||  ||||||||||||||||||||| ||||||| |||||||||| |||||||||||||| |||||||||||||    
T  36724809 aacttctaaccaacactataaggtcttgatcacaccagatcagttcgtaaccactgtattatcaacctcagcaggcttctacaattctttgc 36724718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 30 - 200
Target Start/End: Complemental strand, 1800662 - 1800493
Alignment:
Q  30 ttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttctgactagcacta 129  Q
    |||||||||||| || || |||||||| ||||||||||||||  ||||||||||||||||||||||| | || |||| ||||||||||||| ||||||||    
T  1800662 ttatcctggttcgcctaa-ccggctacgtccagtccccacactacgtgtgagattatccactatagtatcct-gctatcagaaacttctgaatagcacta 1800565  T
Q  130 caatttcttgatcacaccagatcagtccgtaac-ctctgtattatccacctcagcaggcttatacaattctt 200  Q
     ||| | ||||||||||||||||||||||| || |||||||||||| |||||||||||||| ||| ||||||    
T  1800564 taatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 1800493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 30 - 200
Target Start/End: Complemental strand, 22632571 - 22632402
Alignment:
Q  30 ttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttctgactagcacta 129  Q
    |||||||||||| || || |||||||| ||||||||||||||  ||||||||||||||||||||||| | || |||| |||||||||||||||| |||||    
T  22632571 ttatcctggttcgcctaa-ccggctacgtccagtccccacactacgtgtgagattatccactatagtatcct-gctatcagaaacttctgactaacacta 22632474  T
Q  130 caatttcttgatcacaccagatcagtccgtaac-ctctgtattatccacctcagcaggcttatacaattctt 200  Q
     ||| | ||||||||||||||||||||||| || |||||||||||| |||||||||||||| ||| ||||||    
T  22632473 taatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 22632402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 3397108 - 3396923
Alignment:
Q  17 taacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttc--ttgctaacagaaac 114  Q
    ||||||| |||||||||| |||||||||||| || |||||||| ||||||||||| |||||||||||||||||||||||| | |  ||| |   ||||||    
T  3397108 taacacaggagagttatcatggttcaccaaacccagctacttctagtccccacacttcgtgtgagattatccactatagtatacagttggt---agaaac 3397012  T
Q  115 ttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgc 203  Q
    |||| || | ||||| ||  |||||||||||||||||||||||||||||  ||||||||| |||||||||| ||| || ||||||||||    
T  3397011 ttctaaccaacactataaggtcttgatcacaccagatcagtccgtaaccattgtattatcaacctcagcagacttctaaaattctttgc 3396923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 30 - 200
Target Start/End: Complemental strand, 1791164 - 1790999
Alignment:
Q  30 ttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttctgactagcacta 129  Q
    |||||||||||| || || |||||||| ||||||||||||||  ||||||||||||||||||||||| | | |     ||||||||||||| ||||||||    
T  1791164 ttatcctggttcgcctaa-ccggctacgtccagtccccacactacgtgtgagattatccactatagtatccat-----cagaaacttctgaatagcacta 1791071  T
Q  130 caatttcttgatcacaccagatcagtccgtaac-ctctgtattatccacctcagcaggcttatacaattctt 200  Q
     ||| | ||||||||||||||||||||||| || |||||||||||| |||||||||||||| ||| ||||||    
T  1791070 taatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 1790999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 150
Target Start/End: Complemental strand, 18578874 - 18578739
Alignment:
Q  14 gaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaa 113  Q
    ||||||||||||||| ||||||  ||||| |||| ||| |||||| |||||||||||||| |||||||||||| |||  ||  | || | ||||||||||    
T  18578874 gaataacacatgagatttatccatgttcatcaaacccgactactttcagtccccacaccttgtgtgagattattcacagta-atatcctcctaacagaaa 18578776  T
Q  114 cttctgactagcactacaatttcttgatcacaccaga 150  Q
    ||| ||||||| |||| || |||||||| ||||||||    
T  18578775 cttttgactaggactataagttcttgataacaccaga 18578739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 29911349 - 29911278
Alignment:
Q  14 gaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagatta 85  Q
    ||||||||||||||| ||||| ||||| ||||||||| ||| |||||||||||| |||||||||||||||||    
T  29911349 gaataacacatgagatttatcatggttaaccaaatccagctgcttccagtcccctcacctcgtgtgagatta 29911278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 96
Target Start/End: Complemental strand, 16446739 - 16446670
Alignment:
Q  27 gagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagt 96  Q
    |||||||||||| |||| ||||||| |||||| |||||||||||  ||||||||||||||||||||||||    
T  16446739 gagttatcctggatcactaaatccgactactttcagtccccacatttcgtgtgagattatccactatagt 16446670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 257142 - 256921
Alignment:
Q  18 aacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttc--ttgctaacagaaact 115  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||  ||| ||   ||||||    
T  257142 aacacaggagagttatcctggttcaccaaatccggctacttccagtccccacacttcgtgtgaaattatccactatagtattcagttggta---gaaact 257046  T
Q  116 tctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggctt-atacaattctttgcacactagcaaa 214  Q
    ||| || | ||||| ||  ||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||  ||||||||||||  ||||||||||    
T  257045 tctaaccaacactataaagtcttgatcacaccagatcagttcgtaacctctgtattatcaacctcagcaagcttcttacaattctttg--cactagcaaa 256948  T
Q  215 agaaaggttgaaattttctatctcaaa 241  Q
    |||||||||| ||||||||||||||||    
T  256947 agaaaggttggaattttctatctcaaa 256921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 7e-61; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 14 - 203
Target Start/End: Original strand, 5378423 - 5378613
Alignment:
Q  14 gaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaa 113  Q
    |||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5378423 gaataacacaggagaattatcctggttcaccaaacccggctacttccagtccccacacctcgtgtgagattatccactatagttgtcttgctaacagaaa 5378522  T
Q  114 cttctgactagcactacaatttcttgatcacaccagatcagtccgtaac-ctctgtattatccacctcagcaggcttatacaattctttgc 203  Q
    ||||| |||||||||| ||  |||||||||||||||||||||| || || | || ||||||  |||||||||| ||| |||||||||||||    
T  5378523 cttctaactagcactataaggtcttgatcacaccagatcagtctgttacaccctatattataaacctcagcagacttctacaattctttgc 5378613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 5 - 241
Target Start/End: Original strand, 15809966 - 15810208
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccag--------tccccacacctcgtgtgagattatccactatagt 96  Q
    ||||||||  ||||||||| |||| |||||||||||||||||||||| ||||||||||        |||||||||||||||||||||||||||||||| |    
T  15809966 gagagagaataataacacaagagaattatcctggttcaccaaatccgactacttccagagttcgagtccccacacctcgtgtgagattatccactataat 15810065  T
Q  97 tttcttgctaacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaat 196  Q
    | ||||| |||||||||||||||| |||||||| ||  ||||||||||||||||||||||||| ||  |||||||||| || || ||| |||| ||||||    
T  15810066 tatcttggtaacagaaacttctgagtagcactataaggtcttgatcacaccagatcagtccgttacacctgtattatcaacttcggcatgcttctacaat 15810165  T
Q  197 tctttgcacactagcaaaagaaaggttgaaattttctatctcaaa 241  Q
    ||||||   || |||||||||||||||| ||||||||||||||||    
T  15810166 tctttg--aaccagcaaaagaaaggttggaattttctatctcaaa 15810208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 5 - 203
Target Start/End: Original strand, 40999025 - 40999224
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 104  Q
    |||||||| ||||||||||| |||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  40999025 gagagagaggaataacacataagagttatcctggttcaccaaacccgacaacttccagtccccacacctcgtgtgagattatccactatagttgtcttgc 40999124  T
Q  105 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaac-ctctgtattatccacctcagcaggcttatacaattctttgc 203  Q
    |||| ||||||| |||||||||||| ||  | |||||||||||||||||||  || || |  ||||||||| |||||| ||| ||| |||||||||||||    
T  40999125 taacggaaacttatgactagcactataaggttttgatcacaccagatcagtttgttacaccatgtattatcaacctcaacagacttctacaattctttgc 40999224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 14 - 203
Target Start/End: Original strand, 14272017 - 14272205
Alignment:
Q  14 gaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttc--ttgctaacaga 111  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| | |  ||| |   |||    
T  14272017 gaataacacaggagagttatcctggttcaccaaacccggctacttccagtccccacacttcgtgtgagattatccactatagtatgcagttggt---aga 14272113  T
Q  112 aacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgc 203  Q
    ||||||| || | ||||| ||  ||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||    
T  14272114 aacttctaacaaacactataaggtcttgatcacaccagatcagtccgtaaccactgtattatcaacctcagcaggcttctacaattctttgc 14272205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 14281888 - 14282071
Alignment:
Q  19 acacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttc--ttgctaacagaaactt 116  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| | |  ||| |   ||||||||    
T  14281888 acacaggagagttatcctggttcaccaaacccggctacttccagtccccacacttcgtgtgagattatccactatagtatgcagttggt---agaaactt 14281984  T
Q  117 ctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgc 203  Q
    || || | ||||| ||  ||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||    
T  14281985 ctaacaaacactataaggtcttgatcacaccagatcagtccgtaaccactgtattatcaacctcagcaggcttctacaattctttgc 14282071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 14 - 200
Target Start/End: Original strand, 26906245 - 26906431
Alignment:
Q  14 gaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaa 113  Q
    |||||||||| |||| |||||||||||||||||| | ||||||||| |||||||| |||||||||||||||||||| ||||  | ||||| |||||||||    
T  26906245 gaataacacacgagatttatcctggttcaccaaaccaggctacttctagtccccatacctcgtgtgagattatccattata-atatcttgttaacagaaa 26906343  T
Q  114 cttctgactagcactacaatttcttgatcacaccagatcagtccgtaac-ctctgtattatccacctcagcaggcttatacaattctt 200  Q
    |||||||||||||||| || |||||| |||||||||||||||| || || |||||||||||| |||||||||| ||| ||||||||||    
T  26906344 cttctgactagcactataagttcttggtcacaccagatcagtctgttacactctgtattatcaacctcagcagacttttacaattctt 26906431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 27 - 203
Target Start/End: Original strand, 3470949 - 3471124
Alignment:
Q  27 gagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttc--ttgctaacagaaacttctgactag 124  Q
    ||||||||||||||||||||| |||| ||||||||| |||||||| || |||||||||||||||| |||| | |  ||| ||   ||||||||| || |     
T  3470949 gagttatcctggttcaccaaacccggttacttccagcccccacacttcatgtgagattatccactgtagtatacaattggta---gaaacttctaaccaa 3471045  T
Q  125 cactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgc 203  Q
    || || ||  ||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||    
T  3471046 cattataaggtcttgatcacaccagatcagtccgtaaccactgtattatcaacctcagcaggcttctacaattctttgc 3471124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 157
Target Start/End: Original strand, 21919421 - 21919572
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttc--tt 102  Q
    ||||||||  ||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||    
T  21919421 gagagagagaaataacacaggagagttatcctgattcacccaatccggctacttccagtccccacacttcgtgtgagattatccactatagttttcagtt 21919520  T
Q  103 gctaacagaaacttctgactagcactacaatttcttgatcacaccagatcagtcc 157  Q
    | |   |||||||||| || | ||||| ||  |||||||||||||||||||||||    
T  21919521 ggt---agaaacttctaaccaacactataaggtcttgatcacaccagatcagtcc 21919572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 14 - 189
Target Start/End: Complemental strand, 21633768 - 21633594
Alignment:
Q  14 gaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaa 113  Q
    |||||||||| || |  ||| ||||||||||||| |||||||| || ||||||||||| |  ||||||||||||||||||||| ||||  |||  |||||    
T  21633768 gaataacacaagataaatattctggttcaccaaacccggctacgtctagtccccacactttttgtgagattatccactatagtattcta-ctagtagaaa 21633670  T
Q  114 cttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggctt 189  Q
    ||||||||||||| || ||  ||||| |||||||||||||||||| |||  |||||||||| ||||||||||||||    
T  21633669 cttctgactagcattataaggtcttggtcacaccagatcagtccggaacaactgtattatcaacctcagcaggctt 21633594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 30676976 - 30676788
Alignment:
Q  16 ataacacatgagagttatcctggttcac-caaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaac 114  Q
    ||||||||  ||| ||||| |||||||| |||| | | |||||| |||||||||||| ||||||||||||||||| || | | |||  ||||  ||||||    
T  30676976 ataacacacaagatttatcatggttcacacaaagcagactactttcagtccccacacttcgtgtgagattatccattacaatattca-gctataagaaac 30676878  T
Q  115 ttctgactagcactacaatttcttgatcacaccagatcagtccgtaac-ctctgtattatccacctcagcaggcttatacaattctttgc 203  Q
    || ||| |||||||| |  ||||||||||||| ||||||||| || || |||||||||||| | |||| ||  |||||| ||||||||||    
T  30676877 ttatgaatagcactatatgttcttgatcacacaagatcagtctgttacactctgtattatcaatctcaacatacttatataattctttgc 30676788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 28310018 - 28310155
Alignment:
Q  18 aacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttc 117  Q
    |||||| |||| |||||||| |||||| || |||||||||||| ||  ||||||  ||||||   |||||||||||||| | || |||| || |||||||    
T  28310018 aacacaagagatttatcctgattcacctaa-ccggctacttccggtttccacactacgtgtgg--ttatccactatagtatcct-gctatcaaaaacttc 28310113  T
Q  118 tgactagcactacaatttcttgatcacaccagatcagtccgt 159  Q
     || || ||||| || || |||||||||||||||||||||||    
T  28310114 cgaataacactataagttgttgatcacaccagatcagtccgt 28310155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 5 - 203
Target Start/End: Complemental strand, 2306 - 2109
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttc--tt 102  Q
    |||| ||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| | |  ||    
T  2306 gagaaagaagaataacacaagagagttatcctggttcaccaaacccggctacttccagtccccacacttcgtgtgagattatccactatagtatacagtt 2207  T
Q  103 gctaacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttg 202  Q
    | |   | |||||||| || | ||||| ||  ||||||||||||||||||||||||||| | |||||||||| |||||||||||||| ||||||||||||    
T  2206 ggt---ataaacttctaaccaacactataaggtcttgatcacaccagatcagtccgtaatccctgtattatcaacctcagcaggcttctacaattctttg 2110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 5 - 203
Target Start/End: Complemental strand, 124244 - 124047
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttc--tt 102  Q
    |||| ||| |||||||||| |||||||||||||||||| ||||||| | |||||||||||||||||| |||||||||||||||||||||||| | |  ||    
T  124244 gagaaagaagaataacacaggagagttatcctggttcatcaaatcctgttacttccagtccccacacttcgtgtgagattatccactatagtatgcagtt 124145  T
Q  103 gctaacagaaacttctgactagcactacaatttcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttg 202  Q
    | |   |||||||||| || | ||||| ||  ||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||    
T  124144 ggt---agaaacttctaaccaacactataaggtcttgatcacaccagatcagtccgtaaccactgtattatcaacctcagcaggcttctacaattctttg 124048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 30 - 181
Target Start/End: Complemental strand, 100152 - 100002
Alignment:
Q  30 ttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttctgactagcacta 129  Q
    |||||||||||| || || |||||||  ||||||||||||||  |||||||||||||||| |||||| | || |||| ||||||||||||| ||||||||    
T  100152 ttatcctggttcgcctaa-ccggctatgtccagtccccacactacgtgtgagattatccattatagtatcct-gctatcagaaacttctgaatagcacta 100055  T
Q  130 caatttcttgatcacaccagatcagtccgtaac-ctctgtattatccacctca 181  Q
     ||| | |||||||||||| ||||||| || || |||||||||||| ||||||    
T  100054 taatatgttgatcacaccaaatcagtctgttacactctgtattatcaacctca 100002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 135 - 203
Target Start/End: Complemental strand, 143237 - 143169
Alignment:
Q  135 tcttgatcacaccagatcagtccgtaacctctgtattatccacctcagcaggcttatacaattctttgc 203  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||    
T  143237 tcttgatcacaccagatcagtccgtaaccactgtattatcaacctcagcaggcttctacaattctttgc 143169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0269 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 30 - 200
Target Start/End: Original strand, 14830 - 14999
Alignment:
Q  30 ttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttctgactagcacta 129  Q
    |||||||||||| || || |||||||| ||||||||||||||  |||||||||||||||||||||| | || ||||| ||||||||||||| ||||||||    
T  14830 ttatcctggttcgcctaa-ccggctacgtccagtccccacactacgtgtgagattatccactatag-tatcctgctatcagaaacttctgaatagcacta 14927  T
Q  130 caatttcttgatcacaccagatcagtccgtaac-ctctgtattatccacctcagcaggcttatacaattctt 200  Q
     ||| | |||||||||||||||||||| || || |||||||||||| |||||||||||||| ||| ||||||    
T  14928 taatatgttgatcacaccagatcagtctgttacactctgtattatcaacctcagcaggcttctacgattctt 14999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 30 - 200
Target Start/End: Complemental strand, 24762 - 24593
Alignment:
Q  30 ttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgctaacagaaacttctgactagcacta 129  Q
    |||||||||||| || || || ||||| ||||||||||||||  ||||||||||||||||||||||| | || |||| ||||||||||||| ||||||||    
T  24762 ttatcctggttcgcctaa-ccagctacgtccagtccccacactacgtgtgagattatccactatagtatcct-gctatcagaaacttctgaatagcacta 24665  T
Q  130 caatttcttgatcacaccagatcagtccgtaac-ctctgtattatccacctcagcaggcttatacaattctt 200  Q
     ||| | ||||||||||||||||||||||| || |||||||||||| |||||||||||||| ||| ||||||    
T  24664 taatatgttgatcacaccagatcagtccgttacactctgtattatcaacctcagcaggcttctacgattctt 24593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 157
Target Start/End: Original strand, 2251 - 2402
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttc--tt 102  Q
    |||||||| |||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||||||||||||||| | |  ||    
T  2251 gagagagaagaataacacaggagagttatcctggttcacccaatccggctacttctagtccccacacttcttgtgagattatccactatagtatacagtt 2350  T
Q  103 gctaacagaaacttctgactagcactacaatttcttgatcacaccagatcagtcc 157  Q
    | |   |||||||||| || | ||||| ||  |||||||||||||||||||||||    
T  2351 ggt---agaaacttctaaccaacactataaggtcttgatcacaccagatcagtcc 2402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0334 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 5 - 157
Target Start/End: Original strand, 12538 - 12689
Alignment:
Q  5 gagagagatgaataacacatgagagttatcctggttcaccaaatccggctacttccagtccccacacctcgtgtgagattatccactatagttttcttgc 104  Q
    ||||||||  ||||||| | |||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||| | |     
T  12538 gagagagagaaataacataggagagttatcctggttcacccaatccggctacttccagtccctacacttcgtgtgagattatccactatagtttt-tagt 12636  T
Q  105 taacagaaacttctgactagcactacaatttcttgatcacaccagatcagtcc 157  Q
    |   |||||||||| || | ||||| ||  ||||||||||||||||| |||||    
T  12637 tggtagaaacttctaaccaacactataaggtcttgatcacaccagattagtcc 12689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 40 - 203
Target Start/End: Original strand, 27078 - 27246
Alignment:
Q  40 tcaccaaatccggctacttccagtccccacacctcgtgtgagattatcca----ctatagttttcttgctaacagaaacttctgactagcactacaattt 135  Q
    ||||||||  ||||||||||||||||||| || |||||||||||||||||    ||||||| | |   ||| ||||||||||| | || ||||| |  ||    
T  27078 tcaccaaagtcggctacttccagtccccatacttcgtgtgagattatccatccactatagtatccaa-ctatcagaaacttcttaataacactatatgtt 27176  T
Q  136 cttgatcacaccagatcagtccgtaac-ctctgtattatccacctcagcaggctta-tacaattctttgc 203  Q
    ||||||||||| |||||| | ||| || |||||||||||| ||||||||||||||| |||||||||||||    
T  27177 cttgatcacactagatcaattcgttacactctgtattatcaacctcagcaggcttattacaattctttgc 27246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 26309 - 26355
Alignment:
Q  203 cacactagcaaaagaaaggttgaaattttctatctcaaaactattaa 249  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  26309 cacactagcaaaagaaaggttggaattttctatctcaaaactattaa 26355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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