View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18597_low_34 (Length: 242)
Name: NF18597_low_34
Description: NF18597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18597_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 94 - 226
Target Start/End: Original strand, 22919537 - 22919669
Alignment:
| Q |
94 |
gggactcatatttttagtcctctttctcaatcttaacagatttgagcttgagagtctttgtagcagacacatctccagcatcagcagaggcagagggggt |
193 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
22919537 |
gggactcatatttttagtcctttttctcaatcttaacagatttgagcttgacagtctttgtagcagacacatctccagcatcagcagaggcagaggaggt |
22919636 |
T |
|
| Q |
194 |
gaaatccatcaaataattttcggcagacctttt |
226 |
Q |
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||||||||||||| |||||| || |||||||| |
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| T |
22919637 |
gaaatccatcaaaacattttcagcggacctttt |
22919669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 22919444 - 22919485
Alignment:
| Q |
1 |
aaattgagttgtaagctcaatattaaccaaagttttggaatt |
42 |
Q |
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| T |
22919444 |
aaattgagttgtaagctcaatattaaccaaagttttggaatt |
22919485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 94 - 206
Target Start/End: Original strand, 3523673 - 3523785
Alignment:
| Q |
94 |
gggactcatatttttagtcctctttctcaatcttaacagatttgagcttgagagtctttgtagcagacacatctccagcatcagcagaggcagagggggt |
193 |
Q |
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|||||||||| | |||||||| |||||||||||||||| |||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
3523673 |
gggactcatagtcttagtcctttttctcaatcttaacacatttgagcttgacagtctttatagcagacgcatctccagcatcagcagaggcagagggggt |
3523772 |
T |
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| Q |
194 |
gaaatccatcaaa |
206 |
Q |
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||||||||||||| |
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| T |
3523773 |
gaaatccatcaaa |
3523785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 3523580 - 3523621
Alignment:
| Q |
1 |
aaattgagttgtaagctcaatattaaccaaagttttggaatt |
42 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
3523580 |
aaattgagttgtacgctcaatattaaccaaagttttggaatt |
3523621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 18004457 - 18004399
Alignment:
| Q |
119 |
ctcaatcttaacagatttgagcttgagagtctttgtagcagacacatctccagcatcag |
177 |
Q |
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|||||||||||||||||||||||||| || |||||||||||| | |||||||||||||| |
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| T |
18004457 |
ctcaatcttaacagatttgagcttgacagactttgtagcagagaaatctccagcatcag |
18004399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 18004347 - 18004294
Alignment:
| Q |
128 |
aacagatttgagcttgagagtctttgtagcagacacatctccagcatcagcaga |
181 |
Q |
| |
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||||||||||||||||| | ||| |||||||| |||||||||||||||||||| |
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| T |
18004347 |
aacagatttgagcttgacaagcttagtagcagagacatctccagcatcagcaga |
18004294 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 181
Target Start/End: Complemental strand, 16804217 - 16804155
Alignment:
| Q |
119 |
ctcaatcttaacagatttgagcttgagagtctttgtagcagacacatctccagcatcagcaga |
181 |
Q |
| |
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||||||||||||| |||||||||||| || |||||||| ||| | |||||||||||||||||| |
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| T |
16804217 |
ctcaatcttaacatatttgagcttgacaggctttgtagtagagaaatctccagcatcagcaga |
16804155 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 16804106 - 16804053
Alignment:
| Q |
128 |
aacagatttgagcttgagagtctttgtagcagacacatctccagcatcagcaga |
181 |
Q |
| |
|
||||||||||||||||| || ||| |||||||| |||||| || |||||||||| |
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| T |
16804106 |
aacagatttgagcttgacaggcttagtagcagagacatctacaacatcagcaga |
16804053 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 181
Target Start/End: Complemental strand, 47735519 - 47735457
Alignment:
| Q |
119 |
ctcaatcttaacagatttgagcttgagagtctttgtagcagacacatctccagcatcagcaga |
181 |
Q |
| |
|
|||||||||||||||||||||||||| || ||| |||||||| | ||||||||||||| |||| |
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| T |
47735519 |
ctcaatcttaacagatttgagcttgacaggcttcgtagcagagaaatctccagcatcaacaga |
47735457 |
T |
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