View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18597_low_35 (Length: 242)
Name: NF18597_low_35
Description: NF18597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18597_low_35 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 38244678 - 38244485
Alignment:
| Q |
1 |
gtaggctgtggattttaccatcatcgatattttcattgctcttcttcttcttccttttatcattcttgttaatatccccaacatcagtaacaaataaatt |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38244678 |
gtaggctgtgaattttaccatcatcgatattttcattgctcttcttcttcttccttttatcattcttgttaatatccctaacatcagtaacaaataaatt |
38244579 |
T |
|
| Q |
101 |
gatagtttgagaaggcagttcttgtagttgtgatgataaacctacatcaagatcaagatgagaagaagtagtagaagtattcattttcatcatc |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38244578 |
gatagtttgagaaggcagttcttgtagttgtgatgataagcctacatgaagatcaagatgagaagaagtagtagaagtattcattttcatcatc |
38244485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 38260978 - 38260812
Alignment:
| Q |
1 |
gtaggctgtggattttaccatcatcgatattttcattgctcttcttcttcttccttttatcattcttgttaatatccccaacatcagtaacaaataaatt |
100 |
Q |
| |
|
|||||||||||||| | ||||||| ||||||||||| |||||||||||||| || |||| |||||||||| ||||| |||||||| ||| | | ||| |
|
|
| T |
38260978 |
gtaggctgtggattcttccatcattaatattttcatttctcttcttcttctttctcatatcgttcttgttaacatccc-aacatcagcaactgaaatatt |
38260880 |
T |
|
| Q |
101 |
gatagtttgagaaggcagttcttgtagttgtgatgataaacctacatcaagatcaagatgagaagaag |
168 |
Q |
| |
|
|| ||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
38260879 |
aattgtttgagaaggcagttcttgtgattgtgatgataagcctacatggagatcaagatgagaagaag |
38260812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University