View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18597_low_36 (Length: 239)

Name: NF18597_low_36
Description: NF18597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18597_low_36
NF18597_low_36
[»] chr3 (4 HSPs)
chr3 (19-221)||(20766830-20767032)
chr3 (53-195)||(6861181-6861326)
chr3 (19-122)||(8566231-8566334)
chr3 (19-136)||(26207549-26207667)
[»] chr7 (5 HSPs)
chr7 (22-221)||(8303993-8304192)
chr7 (25-136)||(7307005-7307117)
chr7 (19-122)||(1981341-1981444)
chr7 (129-195)||(17809230-17809298)
chr7 (53-97)||(4574756-4574800)
[»] chr5 (8 HSPs)
chr5 (19-159)||(19377583-19377723)
chr5 (53-150)||(13341705-13341801)
chr5 (23-136)||(187894-188009)
chr5 (19-195)||(29270073-29270254)
chr5 (65-195)||(13349586-13349710)
chr5 (143-201)||(19377509-19377567)
chr5 (93-200)||(187999-188116)
chr5 (19-78)||(41427470-41427529)
[»] scaffold0526 (1 HSPs)
scaffold0526 (46-200)||(8094-8251)
[»] chr2 (5 HSPs)
chr2 (19-207)||(21869340-21869526)
chr2 (53-141)||(27749803-27749891)
chr2 (19-84)||(41002071-41002136)
chr2 (53-200)||(26251452-26251601)
chr2 (19-84)||(974383-974448)
[»] chr1 (5 HSPs)
chr1 (19-213)||(24117422-24117619)
chr1 (53-168)||(39845268-39845387)
chr1 (19-212)||(22789135-22789323)
chr1 (23-91)||(8773011-8773079)
chr1 (23-96)||(12002932-12003005)
[»] chr6 (7 HSPs)
chr6 (53-201)||(28669255-28669404)
chr6 (53-146)||(7622022-7622115)
chr6 (61-149)||(20432655-20432742)
chr6 (61-195)||(4596901-4597036)
chr6 (19-96)||(27890419-27890496)
chr6 (61-148)||(20400231-20400320)
chr6 (19-113)||(31407323-31407418)
[»] chr4 (7 HSPs)
chr4 (53-149)||(18437626-18437722)
chr4 (53-149)||(18327676-18327773)
chr4 (126-200)||(55475927-55476001)
chr4 (53-101)||(20812568-20812616)
chr4 (53-98)||(8743819-8743864)
chr4 (19-84)||(55476034-55476099)
chr4 (28-84)||(8409679-8409735)
[»] chr8 (2 HSPs)
chr8 (19-150)||(40541839-40541970)
chr8 (53-103)||(26575164-26575214)
[»] scaffold0684 (2 HSPs)
scaffold0684 (53-106)||(5268-5321)
scaffold0684 (155-207)||(5343-5395)
[»] scaffold1178 (1 HSPs)
scaffold1178 (53-194)||(286-423)
[»] scaffold0163 (2 HSPs)
scaffold0163 (53-106)||(2797-2850)
scaffold0163 (155-207)||(2723-2775)
[»] scaffold0017 (1 HSPs)
scaffold0017 (19-96)||(128694-128771)


Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 20766830 - 20767032
Alignment:
Q  19 atacatatacataaatgactttaaatctatatgaaaatattctttagtagtcataataatgctaaacagcctaaacaaaatacttaaaggcaaattctag 118  Q
    |||| ||||||||||||||| |||  ||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||    
T  20766830 atacttatacataaatgactctaagcctatatggaaatattctttagtagtcataataatgttaaacaacctaaacaaaatactcaaaggcaaattctag 20766929  T
Q  119 atgccttacaaaatacttgatcacaagtgagttagactattaagtttcaaggtaaagactatatgcctaacaaaatatttaaagacaaatcctaggtact 218  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||    
T  20766930 atgcctaacaaaatacttgatcacaagtgagttagactattaagtttcaaggcaaagactatatgcctaacaaagtatttaaaggcaaatcctaggtact 20767029  T
Q  219 agc 221  Q
    |||    
T  20767030 agc 20767032  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 53 - 195
Target Start/End: Original strand, 6861181 - 6861326
Alignment:
Q  53 aaatattctttagtagtcataataatgctaaacagcctaaacaaaatacttaaaggcaaattctagatgccttacaaaatacttgatcacaagtgagtta 152  Q
    ||||||| ||||||| |||||||||||||||||| |||| |||||||||| |||||| ||| ||||||| || |||||| ||||||||| |||||| | |    
T  6861181 aaatattatttagtaatcataataatgctaaacaacctagacaaaatactcaaaggcgaatcctagatgtctgacaaaacacttgatcataagtgattaa 6861280  T
Q  153 --gactattaagtttcaaggtaa-agactatatgcctaacaaaata 195  Q
      ||||||||| |||||| |||| |||||| |||||||||||||||    
T  6861281 gtgactattaaatttcaaagtaagagactagatgcctaacaaaata 6861326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 8566231 - 8566334
Alignment:
Q  19 atacatatacataaatgactttaaatctatatgaaaatattctttagtagtcataataatgctaaacagcctaaacaaaatacttaaaggcaaattctag 118  Q
    ||||||||||||||||||||  ||  ||| ||| || ||||||||||||||||||||||||||||  | |||| | ||||||||||||||||||| |||     
T  8566231 atacatatacataaatgactcaaagcctagatgcaattattctttagtagtcataataatgctaactaacctagaaaaaatacttaaaggcaaatcctaa 8566330  T
Q  119 atgc 122  Q
    ||||    
T  8566331 atgc 8566334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 26207667 - 26207549
Alignment:
Q  19 atacatatacataaatgactttaaatctatatga-aaatattctttagtagtcataataatgctaaacagcctaaacaaaatacttaaaggcaaattcta 117  Q
    |||| |||||||||||||||| || |||| |||  ||||||   ||||||||||||||||||| ||||| | || ||||||||||||| |  |||  |||    
T  26207667 atacttatacataaatgacttaaagtctagatgtcaaatatgtcttagtagtcataataatgcgaaacaacttagacaaaatacttaaggcaaaagacta 26207568  T
Q  118 gatgccttacaaaatactt 136  Q
    |||| || |||||||||||    
T  26207567 gatgtctaacaaaatactt 26207549  T

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Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 22 - 221
Target Start/End: Complemental strand, 8304192 - 8303993
Alignment:
Q  22 catatacataaatgactttaaatctatatgaaaatattctttagtagtcataataatgctaaacagcctaaacaaaatacttaaaggcaaattctagatg 121  Q
    |||||| ||||||||||  ||  ||||||  ||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||     
T  8304192 catatatataaatgactcaaagcctatatagaaatattctttggtagtcataataatgctaaacaacctagacaaaatacttaaaggcaaatcctagata 8304093  T
Q  122 ccttacaaaatacttgatcacaagtgagttagactattaagtttcaaggtaaagactatatgcctaacaaaatatttaaagacaaatcctaggtactagc 221  Q
    ||| | ||||||||||||||||||||||| || ||||||| |||||||  |||||||| |||||||||||||||||||||| |||||  |||||||||||    
T  8304092 cctgataaaatacttgatcacaagtgagtaaggctattaaatttcaagccaaagactagatgcctaacaaaatatttaaaggcaaattataggtactagc 8303993  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 25 - 136
Target Start/End: Complemental strand, 7307117 - 7307005
Alignment:
Q  25 atacataaatgactttaaatctatatga-aaatattctttagtagtcataataatgctaaacagcctaaacaaaatacttaaaggcaaattctagatgcc 123  Q
    ||||||||||||||  ||  ||| |||| ||||||||||||||||||||||||||||||||||  ||| ||||||||| |||||||||||||||||||||    
T  7307117 atacataaatgactcaaagactagatgacaaatattctttagtagtcataataatgctaaacaagctagacaaaatacctaaaggcaaattctagatgcc 7307018  T
Q  124 ttacaaaatactt 136  Q
    | | |||||||||    
T  7307017 tgaaaaaatactt 7307005  T

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Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 1981341 - 1981444
Alignment:
Q  19 atacatatacataaatgactttaaatctatatgaaaatattctttagtagtcataataatgctaaacagcctaaacaaaatacttaaaggcaaattctag 118  Q
    ||||||||||||||||||||  ||  ||| ||| ||||||||||||||||||||||| |||||||| | |||| ||||||||||||||||||||| |||     
T  1981341 atacatatacataaatgactcaaagcctagatgcaaatattctttagtagtcataatgatgctaaataacctagacaaaatacttaaaggcaaatcctaa 1981440  T
Q  119 atgc 122  Q
    ||||    
T  1981441 atgc 1981444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 17809230 - 17809298
Alignment:
Q  129 aaatacttgatcacaagtgagtta--gactattaagtttcaaggtaaagactatatgcctaacaaaata 195  Q
    |||||||||||||||||||||| |  |||| |||||||| |||| ||| |||| |||||| ||||||||    
T  17809230 aaatacttgatcacaagtgagtaagtgactcttaagttttaaggcaaaaactagatgcctgacaaaata 17809298  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 97
Target Start/End: Complemental strand, 4574800 - 4574756
Alignment:
Q  53 aaatattctttagtagtcataataatgctaaacagcctaaacaaa 97  Q
    |||||||||||||||||| |||||||||||| || |||| |||||    
T  4574800 aaatattctttagtagtcgtaataatgctaagcaacctagacaaa 4574756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 159
Target Start/End: Complemental strand, 19377723 - 19377583
Alignment:
Q  19 atacatatacataaatgactttaaatctatatgaaaatattctttagtagtcataataatgctaaacagcctaaacaaaatacttaaaggcaaattctag 118  Q
    ||||||||||||||||||||  ||  ||| ||| ||||||||||||||||||||||||||| |||||| |||| |||||||||||||||| |||| ||||    
T  19377723 atacatatacataaatgactcaaaggctagatgcaaatattctttagtagtcataataatgttaaacaacctagacaaaatacttaaaggtaaatcctag 19377624  T
Q  119 atgccttacaaaatacttgatcacaagtgagttagactatt 159  Q
    |||||| ||||||||||||||||||||||||| || |||||    
T  19377623 atgcctgacaaaatacttgatcacaagtgagtaaggctatt 19377583  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 53 - 150
Target Start/End: Original strand, 13341705 - 13341801
Alignment:
Q  53 aaatattctttagtagtcataataatgctaaacagcctaaacaaaatacttaaaggcaaattctagatgccttacaaaatacttgatcacaagtgagt 150  Q
    ||||||||||||| |||||||||||||||||||  |||| |||||||||||||| |||||| |||||||||||||||| |||||||||| ||||||||    
T  13341705 aaatattctttaggagtcataataatgctaaacgacctagacaaaatacttaaa-gcaaatcctagatgccttacaaagtacttgatcataagtgagt 13341801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 136
Target Start/End: Original strand, 187894 - 188009
Alignment:
Q  23 atatacataaatgactttaaatctatatgaaaatattctttagtagtca-taataatgctaaacagcctaaacaaaatactt-aaaggcaaattctagat 120  Q
    ||||||||||||||||  ||  ||| ||| ||||||| ||||||||||| ||||||||||||||| |||| ||||||||||| |||||||||| ||| ||    
T  187894 atatacataaatgactcaaagcctagatgcaaatattttttagtagtcagtaataatgctaaacaacctatacaaaatacttaaaaggcaaatcctaaat 187993  T
Q  121 gccttacaaaatactt 136  Q
    |||| |||||||||||    
T  187994 gcctgacaaaatactt 188009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 29270254 - 29270073
Alignment:
Q  19 atacatatacataaatgactttaaatctatatga-aaatattctttagtagtcataataatgctaaacagcctaaacaaaatactt--aaaggcaaattc 115  Q
    |||| |||||||||||||||  ||  |||||||| |||||||||||  | ||||||||||||||||||| |||| | |||||||||  ||||| ||||      
T  29270254 atacttatacataaatgactcaaagcctatatgagaaatattcttttattgtcataataatgctaaacaacctagataaaatacttaaaaaggaaaatct 29270155  T
Q  116 tagatgccttacaaaatacttgatcacaagtgagtta--gactattaagtttcaaggtaaagactatatgcctaacaaaata 195  Q
    || ||| || |||||||||||||||| |||||||  |  | |||||| ||||||||| ||| |||| |||||||||||||||    
T  29270154 taaatgtctcacaaaatacttgatcataagtgagaaagtgtctattacgtttcaaggcaaaaactacatgcctaacaaaata 29270073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 65 - 195
Target Start/End: Original strand, 13349586 - 13349710
Alignment:
Q  65 gtagtcataataatgctaaacagcctaaacaaaatacttaaaggcaaattctagatgccttacaaaatacttgatcacaagtgagttagactattaagtt 164  Q
    ||||||||||||||| | |||| || | |||||||||||| |   |||| |||||||||| ||||||||| |||||| ||||      |||| |||||||    
T  13349586 gtagtcataataatgttgaacaaccaagacaaaatacttacaataaaatcctagatgcctaacaaaatacatgatcataagt------gactcttaagtt 13349679  T
Q  165 tcaaggtaaagactatatgcctaacaaaata 195  Q
    ||||||||||||||| |||||| ||||||||    
T  13349680 tcaaggtaaagactagatgcctgacaaaata 13349710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 143 - 201
Target Start/End: Complemental strand, 19377567 - 19377509
Alignment:
Q  143 aagtgagttagactattaagtttcaaggtaaagactatatgcctaacaaaatatttaaa 201  Q
    |||||||| || |||||||||||||||| |||||||| |||||||||||||||||||||    
T  19377567 aagtgagtaaggctattaagtttcaaggcaaagactagatgcctaacaaaatatttaaa 19377509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 200
Target Start/End: Original strand, 187999 - 188116
Alignment:
Q  93 acaaaatacttaaa-ggcaaattctagatgccttacaaaatacttgatcac--------aagtgagttagacta-ttaagtttcaaggtaaagactatat 182  Q
    |||||||||||||| ||||||| ||| |||||| |||||||||||||||||        |||||||| || ||| ||||||||||||| |||||| | ||    
T  187999 acaaaatacttaaaaggcaaatcctaaatgcctgacaaaatacttgatcacgatttcacaagtgagtaaggctaattaagtttcaaggcaaagaccagat 188098  T
Q  183 gcctaacaaaatatttaa 200  Q
    ||||||||||||||||||    
T  188099 gcctaacaaaatatttaa 188116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 41427529 - 41427470
Alignment:
Q  19 atacatatacataaatgactttaaatctatatgaaaatattctttagtagtcataataat 78  Q
    ||||||||||||||||||||  ||  ||| ||| |||||||||||||| |||||||||||    
T  41427529 atacatatacataaatgactcaaagcctagatgcaaatattctttagtggtcataataat 41427470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0526 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 46 - 200
Target Start/End: Complemental strand, 8251 - 8094
Alignment:
Q  46 tatatgaaaatattctttagtagtcataataatgctaaacagc---ctaaacaaaatacttaaaggcaaattctagatgccttacaaaatacttgatcac 142  Q
    |||||| ||||||||||||||||||||||||||| |||| | |   ||| |||||||||||||||| |||| ||| ||| || |||||||||||||||||    
T  8251 tatatgtaaatattctttagtagtcataataatggtaaataacgacctagacaaaatacttaaaggaaaatcctaaatgtctgacaaaatacttgatcac 8152  T
Q  143 aagtgagttagactattaagtttcaaggtaaagactatatgcctaacaaaatatttaa 200  Q
    |||||||| || |||||||||||||||| |||||||| |  |||||||||||||||||    
T  8151 aagtgagtaaggctattaagtttcaaggcaaagactagagacctaacaaaatatttaa 8094  T

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Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 19 - 207
Target Start/End: Original strand, 21869340 - 21869526
Alignment:
Q  19 atacatatacataaatgactttaaatctatatgaaaatattctttagtagtcataataatgctaaacagcctaaacaaaatacttaaaggcaaattctag 118  Q
    ||||||||||||||||||||  ||   || ||| |||||| |||||||||| ||||| ||| ||||   |||| |||||||||||||| | |||| ||||    
T  21869340 atacatatacataaatgactcaaagcatagatgcaaatatactttagtagtgataatgatgttaaaa--cctacacaaaatacttaaaagaaaatcctag 21869437  T
Q  119 atgccttacaaaatacttgatcacaagtgagttagactattaagtttcaaggtaaagactatatgcctaacaaaatatttaaagacaaa 207  Q
    |||| | |||||||||||||||| || ||||| || |||||||||||||||  |||||||| |||||||||||||||||||||| ||||    
T  21869438 atgcatgacaaaatacttgatcataaatgagtaaggctattaagtttcaagacaaagactagatgcctaacaaaatatttaaaggcaaa 21869526  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 53 - 141
Target Start/End: Original strand, 27749803 - 27749891
Alignment:
Q  53 aaatattctttagtagtcataataatgctaaacagcctaaacaaaatacttaaaggcaaattctagatgccttacaaaatacttgatca 141  Q
    ||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||| ||||  || ||| || ||||||||||||||||    
T  27749803 aaatattatttagtagtcataataatgttaaacaacctaaacaaaatacttaaaggaaaatcatatatgtctgacaaaatacttgatca 27749891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 41002136 - 41002071
Alignment:
Q  19 atacatatacataaatgactttaaatctatatgaaaatattctttagtagtcataataatgctaaa 84  Q
    ||||||||||||||||||||  ||| ||| ||| ||||||| ||||||||||||||||||||||||    
T  41002136 atacatatacataaatgactcaaaacctagatgcaaatattttttagtagtcataataatgctaaa 41002071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 53 - 200
Target Start/End: Complemental strand, 26251601 - 26251452
Alignment:
Q  53 aaatattctttagtagtcataataatgctaaacagcctaa-acaaaatacttaaaggcaaattctagatgccttacaaaatacttgatcacaagtgagtt 151  Q
    ||||||||| |||| ||||| |||||||||||||  |||| |||||||| |||| | |||||  ||||||| | |||||||||||||||| || | |||     
T  26251601 aaatattctctagtggtcatgataatgctaaacaatctaagacaaaatatttaacg-caaatcatagatgcttgacaaaatacttgatcataaataagta 26251503  T
Q  152 --agactattaagtttcaaggtaaagactatatgcctaacaaaatatttaa 200  Q
      ||||| ||||||||||||| |||||||| ||| || |||||||| ||||    
T  26251502 cgagactcttaagtttcaaggcaaagactagatgactgacaaaatacttaa 26251452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 974448 - 974383
Alignment:
Q  19 atacatatacataaatgactttaaatctatatgaaaatattctttagtagtcataataatgctaaa 84  Q
    ||||||||||||||||||||  ||  ||| ||| ||||||||||||||||||||||||||| ||||    
T  974448 atacatatacataaatgactcaaagcctagatgcaaatattctttagtagtcataataatgttaaa 974383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 24117619 - 24117422
Alignment:
Q  19 atacatatacataaatgactttaaatctatatga-aaatattctttagtagtcataataatgctaaacagcctaaacaaaatacttaaag-gcaaattct 116  Q
    ||||||||||||||||||||   || ||| |||  |||||||||||||| |||||||||||| |||||| |||| | |||||| |||||  |||||| ||    
T  24117619 atacatatacataaatgactcagaacctagatgtgaaatattctttagttgtcataataatgataaacaacctagataaaatatttaaaatgcaaatcct 24117520  T
Q  117 agatgccttacaaaatacttgatcacaagtgagttag--actattaagtttcaaggtaaagactatatgcctaacaaaatatttaaagacaaatcctag 213  Q
    |||||||| ||| |||||||||||| |||||||  ||  ||||||||||||||||| |||||||| || |||||||||||| |||||| ||||||||||    
T  24117519 agatgcctaacataatacttgatcataagtgaggaagtgactattaagtttcaaggcaaagactagatccctaacaaaatacttaaag-caaatcctag 24117422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 53 - 168
Target Start/End: Original strand, 39845268 - 39845387
Alignment:
Q  53 aaatattctttagtagtcataataatgctaaacagcctaaacaaaatactt--aaaggcaaattctagatgccttacaaaatacttgatcacaagtgagt 150  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||  |||||||||| |||||||||  |  ||||||||||||| ||||||||    
T  39845268 aaatattctttagtagtcataataatgctaaacaacctagacaaaatacttaaaaaggcaaatcctagatgcccgattaaatacttgatcataagtgagt 39845367  T
Q  151 ta--gactattaagtttcaa 168  Q
     |  |||| |||||||||||    
T  39845368 aagtgactcttaagtttcaa 39845387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 22789323 - 22789135
Alignment:
Q  19 atacatatacataaatgactttaaatctatatga-aaatattctttagtagtcataataatgctaaacagcctaaacaaaatactt-aaaggcaaattct 116  Q
    ||||||||||||||||||||  ||  |||||||  ||||| ||| |||||||||||||||||||||||| |||||||||||||||| ||||| ||||  |    
T  22789323 atacatatacataaatgactcaaagcctatatgtcaaatactctatagtagtcataataatgctaaacaacctaaacaaaatacttaaaaggaaaatcat 22789224  T
Q  117 agatgccttacaaaatacttgatcacaagtgagtta--gactattaagtttcaaggtaaagactatatgcctaacaaaatatttaaagacaaatccta 212  Q
    | |||||| ||         ||||| |||||||| |  |||||||||||||||||| ||| |||| ||||||||||||||| ||||||  ||||||||    
T  22789223 aaatgcctaac---------gatcataagtgagtaagtgactattaagtttcaaggaaaaaactagatgcctaacaaaatacttaaaggaaaatccta 22789135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 8773079 - 8773011
Alignment:
Q  23 atatacataaatgactttaaatctatatgaaaatattctttagtagtcataataatgctaaacagccta 91  Q
    ||||||||||||||||| ||  ||||||  |||||||||||||||||||||||||||||||||| ||||    
T  8773079 atatacataaatgacttaaagcctatatacaaatattctttagtagtcataataatgctaaacaaccta 8773011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 12002932 - 12003005
Alignment:
Q  23 atatacataaatgactttaaatctatatgaaaatattctttagtagtcataataatgctaaacagcctaaacaa 96  Q
    ||||| ||||||||||  ||  ||| ||| |||||||||||||  ||||||||||||||||||| |||| ||||    
T  12002932 atatatataaatgactcaaagcctagatgcaaatattctttagcggtcataataatgctaaacaacctagacaa 12003005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 53 - 201
Target Start/End: Complemental strand, 28669404 - 28669255
Alignment:
Q  53 aaatattctttagtagtcataataatgctaaacagcctaaacaaaatacttaaaggcaaattctagatgccttacaaaatacttgatcacaagtgagtta 152  Q
    |||||||||||||||||||||||||| ||||||| | || ||||||||||||||||||||| |||||||  | ||||||||||| |||| ||| || | |    
T  28669404 aaatattctttagtagtcataataatactaaacaacttagacaaaatacttaaaggcaaatcctagatgtgtgacaaaatactt-atcataagcgaataa 28669306  T
Q  153 --gactattaagtttcaaggtaaagactatatgcctaacaaaatatttaaa 201  Q
      |||||||||||||||||| |||||||| ||||||| ||||||| |||||    
T  28669305 gtgactattaagtttcaagggaaagactagatgcctaccaaaatacttaaa 28669255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 53 - 146
Target Start/End: Original strand, 7622022 - 7622115
Alignment:
Q  53 aaatattctttagtagtcataataatgctaaacagcctaaacaaaatacttaaaggcaaattctagatgccttacaaaatacttgatcacaagt 146  Q
    |||||||||||||||||||| |||||| |||||| |||| |||||||| |||||||||||| ||| ||||   |||||||||||||||| ||||    
T  7622022 aaatattctttagtagtcatgataatgataaacaacctagacaaaatatttaaaggcaaatcctaaatgctcgacaaaatacttgatcataagt 7622115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 61 - 149
Target Start/End: Original strand, 20432655 - 20432742
Alignment:
Q  61 tttagtagtcataataatgctaaacagcctaaacaaaatacttaaaggcaaattctagatgccttacaaaatacttgatcacaagtgag 149  Q
    |||| ||||||||||||| ||||||| |||||||||||||||||||| |||| |||||||| || ||||||||||| |||| |||||||    
T  20432655 tttattagtcataataatactaaacaacctaaacaaaatacttaaagacaaa-tctagatgtctgacaaaatactttatcataagtgag 20432742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 195
Target Start/End: Original strand, 4596901 - 4597036
Alignment:
Q  61 tttagtagtcataataatgctaaacagcctaaacaaaatacttaaaggcaaattctagatgccttacaaaatacttgatcacaagtgagtta--gactat 158  Q
    ||||||||| |||||||||||| ||| | || |||||||||||||| | |||| |||||||||  |||||||| ||||||| || ||||| |  ||||||    
T  4596901 tttagtagtgataataatgctacacaacttagacaaaatacttaaa-gtaaatcctagatgccagacaaaataattgatcataaatgagtaaatgactat 4596999  T
Q  159 taagtttcaaggtaaagactatatgcctaacaaaata 195  Q
    ||||||| |||| | || | ||||| ||| |||||||    
T  4597000 taagttttaaggaatagccgatatggctaccaaaata 4597036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 27890496 - 27890419
Alignment:
Q  19 atacatatacataaatgactttaaatctatatgaaaatattctttagtagtcataataatgctaaacagcctaaacaa 96  Q
    ||||||||| ||||||| ||  ||  ||| ||| |||||||||||||||||||||||||||||||||| |||| ||||    
T  27890496 atacatatatataaatgtctcaaagcctagatgcaaatattctttagtagtcataataatgctaaacaacctagacaa 27890419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 148
Target Start/End: Original strand, 20400231 - 20400320
Alignment:
Q  61 tttagtagtcataataatgctaaacagcctaaacaaaatactt-aaaggcaaattctagatgcct-tacaaaatacttgatcacaagtga 148  Q
    |||| ||||||||||||| ||||||| ||||||||||||| || |||| ||||| ||||||| ||  ||||||||||| |||| ||||||    
T  20400231 tttattagtcataataatactaaacaacctaaacaaaatagttaaaagacaaatcctagatgtctgaacaaaatactttatcataagtga 20400320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 31407418 - 31407323
Alignment:
Q  19 atacatatacataaatgactttaaatctatatga-aaatattctttagtagtcataataatgctaaacagcctaaacaaaatacttaaaggcaaat 113  Q
    |||| |||||||||||||||  || |||| |||  |||||| |||||||||||||||||||| |||| | |||| |||| |||||| ||| |||||    
T  31407418 atacttatacataaatgactaaaagtctagatgccaaatatactttagtagtcataataatgttaaaaaacctagacaagatactttaagacaaat 31407323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 53 - 149
Target Start/End: Original strand, 18437626 - 18437722
Alignment:
Q  53 aaatattctttagtagtcataataatgctaaacagcctaaacaaaatacttaaaggcaaattctagatgccttacaaaatacttgatcacaagtgag 149  Q
    ||||||| |||||||||||| |||||| |||||| |||||||||||||||||||| ||||| |||||||  | |||||||||||||||| |||||||    
T  18437626 aaatattttttagtagtcatgataatgttaaacaacctaaacaaaatacttaaagacaaatcctagatgtttgacaaaatacttgatcataagtgag 18437722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 53 - 149
Target Start/End: Complemental strand, 18327773 - 18327676
Alignment:
Q  53 aaatattctttagtagtcataataatgctaaacagcctaaacaaaatacttaaaggcaaattctagatgccttacaaaat-acttgatcacaagtgag 149  Q
    ||||||| |||||||||||| |||||| |||||| |||||||||||||||||||| ||||| |||||||  | ||||||| ||||||||| |||||||    
T  18327773 aaatattttttagtagtcatgataatgttaaacaacctaaacaaaatacttaaagacaaatcctagatgtttgacaaaataacttgatcataagtgag 18327676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 55476001 - 55475927
Alignment:
Q  126 acaaaatacttgatcacaagtgagttagactattaagtttcaaggtaaagactatatgcctaacaaaatatttaa 200  Q
    ||||||||||||||||||||||||| ||  || | |||||||||| |||||||| | || |||||||||||||||    
T  55476001 acaaaatacttgatcacaagtgagtaagggtactcagtttcaaggcaaagactagaggcttaacaaaatatttaa 55475927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 20812616 - 20812568
Alignment:
Q  53 aaatattctttagtagtcataataatgctaaacagcctaaacaaaatac 101  Q
    |||||||||||||||||||||||||||||||||| |||| | |||||||    
T  20812616 aaatattctttagtagtcataataatgctaaacaacctagataaaatac 20812568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 8743819 - 8743864
Alignment:
Q  53 aaatattctttagtagtcataataatgctaaacagcctaaacaaaa 98  Q
    ||||||||||||||||||||||||||| |||||| |||| ||||||    
T  8743819 aaatattctttagtagtcataataatgttaaacaacctagacaaaa 8743864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 55476099 - 55476034
Alignment:
Q  19 atacatatacataaatgactttaaatctatatgaaaatattctttagtagtcataataatgctaaa 84  Q
    |||||||||||||||||| |  ||  ||| ||| ||||||||||||||||||||||||||| ||||    
T  55476099 atacatatacataaatgattcaaagcctagatgcaaatattctttagtagtcataataatgataaa 55476034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 8409735 - 8409679
Alignment:
Q  28 cataaatgactttaaatctatatgaaaatattctttagtagtcataataatgctaaa 84  Q
    |||||||||||  ||  ||| ||| ||||||||||||||||||||||||||||||||    
T  8409735 cataaatgactcaaagcctagatgcaaatattctttagtagtcataataatgctaaa 8409679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 40541839 - 40541970
Alignment:
Q  19 atacatatacataaatgactttaaatctatatgaaaatattctttagtagtcataataatgctaaacagcctaaacaaaatacttaaaggcaaattctag 118  Q
    |||| |||||||||||||||  ||   || ||| |||| ||||||||||||||||||||||  ||| | |||| |||||| ||||||||| |||| |||     
T  40541839 atacgtatacataaatgactcaaagcatagatgcaaatgttctttagtagtcataataatggcaaataacctagacaaaacacttaaaggaaaatcctaa 40541938  T
Q  119 atgccttacaaaatacttgatcacaagtgagt 150  Q
    |||||| |||||||||||||||||||||||||    
T  40541939 atgcctgacaaaatacttgatcacaagtgagt 40541970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 26575164 - 26575214
Alignment:
Q  53 aaatattctttagtagtcataataatgctaaacagcctaaacaaaatactt 103  Q
    |||||||||||||| |||||||||||| |||||| |||||||||| |||||    
T  26575164 aaatattctttagttgtcataataatgttaaacaacctaaacaaagtactt 26575214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0684 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 5268 - 5321
Alignment:
Q  53 aaatattctttagtagtcataataatgctaaacagcctaaacaaaatacttaaa 106  Q
    |||||||||||||| ||||||||||||||| ||| |||||||||||||||||||    
T  5268 aaatattctttagtggtcataataatgctagacaacctaaacaaaatacttaaa 5321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0684; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 5343 - 5395
Alignment:
Q  155 ctattaagtttcaaggtaaagactatatgcctaacaaaatatttaaagacaaa 207  Q
    ||||||||||| || | |||||||| ||||||||||||||| |||||| ||||    
T  5343 ctattaagttttaatgcaaagactagatgcctaacaaaataattaaaggcaaa 5395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1178 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold1178
Description:

Target: scaffold1178; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 194
Target Start/End: Complemental strand, 423 - 286
Alignment:
Q  53 aaatattctttagtagtcataataatgctaaacagcctaaacaaaatacttaaaggcaaattctagatgccttacaaaatacttgatcacaagtgagtta 152  Q
    ||||||||||| ||||||||||||||| |||||| |||| ||||||||||||||| ||||  ||  ||| || |||    ||||||||| |||||||| |    
T  423 aaatattctttggtagtcataataatgttaaacaacctagacaaaatacttaaagtcaaaacct--atgtctgaca----acttgatcataagtgagtaa 330  T
Q  153 --gactattaagtttcaaggtaaagactatatgcctaacaaaat 194  Q
      | |||| ||| || ||||||||||||| ||||||||||||||    
T  329 gtggctataaagatttaaggtaaagactagatgcctaacaaaat 286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 106
Target Start/End: Complemental strand, 2850 - 2797
Alignment:
Q  53 aaatattctttagtagtcataataatgctaaacagcctaaacaaaatacttaaa 106  Q
    |||||||||||||| ||||||||| ||||| ||| |||||||||||||||||||    
T  2850 aaatattctttagtggtcataatagtgctagacaacctaaacaaaatacttaaa 2797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 2775 - 2723
Alignment:
Q  155 ctattaagtttcaaggtaaagactatatgcctaacaaaatatttaaagacaaa 207  Q
    ||||||||||| || | |||||||| ||||||||||||||| |||||| ||||    
T  2775 ctattaagttttaatgcaaagactagatgcctaacaaaataattaaaggcaaa 2723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 128694 - 128771
Alignment:
Q  19 atacatatacataaatgactttaaatctatatgaaaatattctttagtagtcataataatgctaaacagcctaaacaa 96  Q
    ||||||||||| ||||||||  ||| ||| ||| |||||||||||| || |||||||||||||||||| |||| ||||    
T  128694 atacatatacacaaatgactcaaaacctagatgcaaatattctttactaatcataataatgctaaacaacctagacaa 128771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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