View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18597_low_40 (Length: 235)
Name: NF18597_low_40
Description: NF18597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18597_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 1323437 - 1323493
Alignment:
| Q |
13 |
aatatatatacatttataaaatgaatttgattaccaacggtcatttccgtgattttt |
69 |
Q |
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| T |
1323437 |
aatatatatacatttataaaatgaatttgattaccaacggtcatttccgtgattttt |
1323493 |
T |
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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 1323545 - 1323620
Alignment:
| Q |
139 |
ttttaaaaccttggtaataatcattannnnnnnnnagagagatgatattgacaaacatccaaagtacgccttgctac |
215 |
Q |
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| T |
1323545 |
ttttaaaaccttggtaataatcattatttttttt-agagagatgatattgacaaacatccaaagtacgccttactac |
1323620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 108
Target Start/End: Original strand, 1323510 - 1323548
Alignment:
| Q |
70 |
cggagaaaaaatgatatcagatactacttgtactatttt |
108 |
Q |
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| T |
1323510 |
cggagaaaaaatggtatcagatactactagtactatttt |
1323548 |
T |
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