View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18597_low_46 (Length: 207)
Name: NF18597_low_46
Description: NF18597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18597_low_46 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 159; Significance: 7e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 12 - 178
Target Start/End: Original strand, 29520106 - 29520272
Alignment:
| Q |
12 |
gattattctaataaatggtacaaagaaaagtacataaataggaatcaatgtgcataagaaaataagtgggatagcaggaatggatgatgcaggtactcta |
111 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
29520106 |
gatttttctaataaatggtacaaagaaaagtacataaataggaatcaatgtgcataagaaaataagtgggataacaggaatggatgatgcaggtactcta |
29520205 |
T |
|
| Q |
112 |
aaggaaccaagtttaaggttcattgcattcccttgttgtactgagaatgttcgaagttgtgctaaac |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29520206 |
aaggaaccaagtttaaggttcattgcattcccttgttgtactgagaatgttcgaagttgtgctaaac |
29520272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 5331639 - 5331570
Alignment:
| Q |
109 |
ctaaaggaaccaagtttaaggttcattgcattcccttgttgtactgagaatgttcgaagttgtgctaaac |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5331639 |
ctaaaggaaccaagtttaaggttcattgcattcccttgttgtactgagaatgttcgaagttgtgctaaac |
5331570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 12 - 178
Target Start/End: Original strand, 37982297 - 37982463
Alignment:
| Q |
12 |
gattattctaataaatggtacaaagaaaagtacataaataggaatcaatgtgcataagaaaataagtgggatagcaggaatggatgatgcaggtactcta |
111 |
Q |
| |
|
|||| ||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| | |
|
|
| T |
37982297 |
gatttttctaatgaatggtacaaagaaaagttcataaattggaatcaatgtgcataagaaaattagtgggataacaggaatggatgatgcaggtactgtg |
37982396 |
T |
|
| Q |
112 |
aaggaaccaagtttaaggttcattgcattcccttgttgtactgagaatgttcgaagttgtgctaaac |
178 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||| |||||||||||| |||| |||||||||| |
|
|
| T |
37982397 |
aaggaaccaagtttaaggttcattgaatttccttgttgaactgagaatgtttgaagctgtgctaaac |
37982463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 37 - 178
Target Start/End: Original strand, 45806126 - 45806267
Alignment:
| Q |
37 |
aaaagtacataaataggaatcaatgtgcataagaaaataagtgggatagcaggaatggatgatgcaggtactctaaaggaaccaagtttaaggttcattg |
136 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||| | ||||||||||||||||||||||||| |
|
|
| T |
45806126 |
aaaagttcataaataggaatcaatgtgcatacgaaaataagtgggatgacaggaatggatgatgtaggtactgtgaaggaaccaagtttaaggttcattg |
45806225 |
T |
|
| Q |
137 |
cattcccttgttgtactgagaatgttcgaagttgtgctaaac |
178 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
45806226 |
cattcccttgttgtactgagaatgtttgaagttgtgctaaac |
45806267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 24 - 178
Target Start/End: Complemental strand, 45661161 - 45661007
Alignment:
| Q |
24 |
aaatggtacaaagaaaagtacataaataggaatcaatgtgcataagaaaataagtgggatagcaggaatggatgatgcaggtactctaaaggaaccaagt |
123 |
Q |
| |
|
|||||| |||||||||||| ||||||| |||| ||| ||| || ||||||||| ||||| ||||||| |||||||| || || |||| ||||||||| |
|
|
| T |
45661161 |
aaatggaacaaagaaaagttcataaattggaaccaaaatgcttatgaaaataagagggatgacaggaattgatgatgctggaacagtaaatgaaccaagt |
45661062 |
T |
|
| Q |
124 |
ttaaggttcattgcattcccttgttgtactgagaatgttcgaagttgtgctaaac |
178 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||| |||| |||||||||| |
|
|
| T |
45661061 |
ttaaggttcattacattcccttgctgtactgagaatgtttgaagctgtgctaaac |
45661007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University