View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18597_low_5 (Length: 547)
Name: NF18597_low_5
Description: NF18597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18597_low_5 |
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| [»] scaffold0017 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 19 - 539
Target Start/End: Original strand, 14014924 - 14015446
Alignment:
| Q |
19 |
ctagggatatagcagtaatcattcttgataaaatcactaaccttagcattaacattaatagagtgctctaaaagtacaggcttatcaagctaattatcaa |
118 |
Q |
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| T |
14014924 |
ctagggatatagcagtaatcattcttgataaaatcactaaccttagcattaacattaatagagtgctctaaaagtaaaggcttatcaagctaattatcaa |
14015023 |
T |
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| Q |
119 |
accagaaatcgatagagttcgcaacttcgcatcatcaagatgccatctagaactgcaatgaacaacatggatttacttttgatacctctcaggaatatga |
218 |
Q |
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| T |
14015024 |
accagaaatcgatagagttagcaacttcgcatcaccaagatgccatctagaactgcaatgaacaacatggatttacttttgatacctctcaggaatatga |
14015123 |
T |
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| Q |
219 |
tagttaaagaaaccatggtttctattcactatctattaaaaattagcccaggcattactataggaaagaaactcaacataattcaagacaagttgcttca |
318 |
Q |
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| T |
14015124 |
tagttaaagaaaccatggtttctattcactatctaataaaaattagcccaggcattactattggaaagaaactcaacataattcaagaaaagttgcttca |
14015223 |
T |
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| Q |
319 |
ttgatgtctctaatggatcttagaccaagacgtcccccattcatagaagagcaaaccttgtgctaaaccaagttaacaagctatcaactctaagttacca |
418 |
Q |
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| T |
14015224 |
ttgatgtctctaatggatcttagaccaagacctcccccattcatagaagagcaaaccttgtgctaaaccaagttaacaagctatcaactataagttacca |
14015323 |
T |
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| Q |
419 |
agctatctatcacacataataaatatgtttattgtt--nnnnnnnnttacactaacaatgcatgaaaatcaaactatatttttcacattttaacaaacat |
516 |
Q |
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| T |
14015324 |
agctatttatcacacataataaatatgtttattgttaaaaaaaaaattacactaacaatgcatgaaaattaaactatatttttcacattttaacaaacat |
14015423 |
T |
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| Q |
517 |
aatcaacgtcgataagaataatc |
539 |
Q |
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| T |
14015424 |
aatcaacgtcgataagaataatc |
14015446 |
T |
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Target: scaffold0017 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 363
Target Start/End: Complemental strand, 27352 - 27281
Alignment:
| Q |
292 |
caacataattcaagacaagttgcttcattgatgtctctaatggatcttagaccaagacgtcccccattcata |
363 |
Q |
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|||||||||| |||| || ||| ||| |||||||||||||||||||| ||| |||||| |||| | |||||| |
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| T |
27352 |
caacataattaaagagaaattgtttcgttgatgtctctaatggatctgagatcaagacctccctctttcata |
27281 |
T |
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