View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18597_low_6 (Length: 523)
Name: NF18597_low_6
Description: NF18597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18597_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 460; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 13 - 516
Target Start/End: Original strand, 2747189 - 2747696
Alignment:
| Q |
13 |
aatatgaccacaaagatccaaagataccaactgcaaccattaaaataaaatggtgaattagtgacaagagagaatcaacaacaatacaatataagttgca |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2747189 |
aatatgaccacaaagatccaaagataccaactgcaaccattaaaataaaatggtgagttagtgacaagagagaatcaacaacattacaatataagttgca |
2747288 |
T |
|
| Q |
113 |
caaagaaaatttggcctacttattatattgcttatgattgatgaagattttgatagttatagaaactttgcatatccacatacctaataccaacaacgtt |
212 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2747289 |
caaagaaaatttggcctacttattat--tgcttatgattgatgaagattttgatagttatagaaactttgcatatccacatacctaataccaacaacgtt |
2747386 |
T |
|
| Q |
213 |
ttggaagtcatcttcaagtgcacggatcatgtacttgtgaaaattaaactttggatttcccctacaatgagtctaaaatagaaaaacaaaattaataata |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2747387 |
ttggaagtcatcttcaagtgcacggatcatgtacttgtgaaaattaaactttggatttcccctacaatgagtctaaaatagaaaaacaaaattaataata |
2747486 |
T |
|
| Q |
313 |
tggttcaatcatatatataattgcaaatacataacatacaaatcttaccataatgaaaccacgccttaatgtcacataatccaactttgtcactgatcca |
412 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2747487 |
tggttcaatcatatatataattgcaaatacataacatacatatcttaccataatgaaaccacgccttaatgtcacataatccaactttgtcactgatcca |
2747586 |
T |
|
| Q |
413 |
taaaattgcttgaaaaatgatttctgaaatatatatgaaaaattacaaggcataatcaactac------aatagtcaaagacaatatggtaaaaccagaa |
506 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2747587 |
taaaattgcttgaaaaatgatttctgaaatataaatgaaaaattacaaggcataatcaactacaatattaatagtcaaagacaatatggtaaaaccagaa |
2747686 |
T |
|
| Q |
507 |
aagtataatc |
516 |
Q |
| |
|
|||||||||| |
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|
| T |
2747687 |
aagtataatc |
2747696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 13 - 439
Target Start/End: Original strand, 2755248 - 2755662
Alignment:
| Q |
13 |
aatatgaccacaaagatccaaagataccaactgcaaccattaaaataaaatggtgaattagtgacaagagagaatcaacaacaatacaatataagttgca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||| | ||| |||| |||| | || | |
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| T |
2755248 |
aatatgaccacaaagatccaaagataccaactgcaaccattaaaataaaatggtgaattaatgacaacaaagaatacataactttacactataggctgaa |
2755347 |
T |
|
| Q |
113 |
caaagaaaatttggcctacttattatattgcttatgattgatgaagattttgatagttatagaaactttgcatatccacatacctaataccaacaacgtt |
212 |
Q |
| |
|
|||||||||||||||| | || ||| || |||||||||| | || ||||||||||| | | | ||||||||||||| ||||| || |
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|
| T |
2755348 |
caaagaaaatttggccaa-----taaattact-------gatgaagattgtagtaaatatagaaacttgatagaagcgcatacctaataccgacaacttt |
2755435 |
T |
|
| Q |
213 |
ttggaagtcatcttcaagtgcacggatcatgtacttgtgaaaattaaactttggatttcccctacaatgagtctaaaatagaaaaacaaaattaataata |
312 |
Q |
| |
|
| ||| ||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| | | ||||| ||||||||||| |
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|
| T |
2755436 |
cttgaaatcatcttcaagcgcacggttcatgtacttgtgaaaattaaacttcggatttcccctacaatgagtctaaaaca-ataaacagaattaataata |
2755534 |
T |
|
| Q |
313 |
tggttcaatcatatat-ataattgcaa-atacataacatacaaatcttaccataatgaaaccacgccttaatgtcacataatccaactttgtcactgatc |
410 |
Q |
| |
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|| ||||||||||||| ||||| |||| ||| ||| |||||||||| ||||||||||| |||||||||||||||| |||||||||||||| |||| |
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| T |
2755535 |
tgattcaatcatatataataatggcaagata-tgcacactaaaatcttaccttaatgaaaccaagccttaatgtcacatagtccaactttgtcacagatc |
2755633 |
T |
|
| Q |
411 |
cataaaattgcttgaaaaatgatttctga |
439 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
2755634 |
cataaaattgcttgaaaaatgatttctga |
2755662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 250 - 457
Target Start/End: Original strand, 2372741 - 2372946
Alignment:
| Q |
250 |
tgaaaattaaactttggatttcccctacaatgagtctaaaatagaaaaacaaaattaataatatggttcaatcatatatataattgcaaatacata-aca |
348 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||| ||||| || || |||||||||||| |||||| ||| ||| |||| || | || ||| |
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|
| T |
2372741 |
tgaaaattaaactttgaat---ccctacaatgagtctaatatagagaatcatcattaataatatgattcaataatagataatattggcaagatatgcaca |
2372837 |
T |
|
| Q |
349 |
tacaaatcttaccataatgaaaccacgccttaatgtcacataatccaactttgtcactgatccataaaattgcttgaaaaatgatttctgaaatatatat |
448 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||| || ||| ||||||||||||| |||||||||||||||||||||| | |||||||||||| | || |
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|
| T |
2372838 |
ctaaaatcttaccttaatgaaaccaagccttaatgccatatagtccaactttgtcatagatccataaaattgcttgaaaatttatttctgaaataaaaat |
2372937 |
T |
|
| Q |
449 |
gaaaaatta |
457 |
Q |
| |
|
| ||||||| |
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|
| T |
2372938 |
gcaaaatta |
2372946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 356 - 441
Target Start/End: Complemental strand, 55322128 - 55322043
Alignment:
| Q |
356 |
cttaccataatgaaaccacgccttaatgtcacataatccaactttgtcactgatccataaaattgcttgaaaaatgatttctgaaa |
441 |
Q |
| |
|
|||||| ||||||||||| | |||||||| |||||||| | |||||||| || |||||||||||||||||||| |||| |||||| |
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| T |
55322128 |
cttaccgtaatgaaaccaagtcttaatgtgacataatctgattttgtcacagagccataaaattgcttgaaaaaggattgctgaaa |
55322043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 220 - 266
Target Start/End: Complemental strand, 55322305 - 55322259
Alignment:
| Q |
220 |
tcatcttcaagtgcacggatcatgtacttgtgaaaattaaactttgg |
266 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||||||||| |
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|
| T |
55322305 |
tcatcttcaagggcacgaatcatgtacttgtgaaaattaaactttgg |
55322259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 55322535 - 55322485
Alignment:
| Q |
9 |
caagaatatgaccacaaagatccaaagataccaactgcaaccattaaaata |
59 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||| |||||| |
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|
| T |
55322535 |
caagaagatgaccacaaagagccaaagataccaactgcaaccatgaaaata |
55322485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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