View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18597_low_7 (Length: 521)

Name: NF18597_low_7
Description: NF18597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18597_low_7
NF18597_low_7
[»] chr3 (5 HSPs)
chr3 (9-388)||(1639281-1639659)
chr3 (153-242)||(7634451-7634541)
chr3 (35-75)||(14264882-14264922)
chr3 (20-75)||(7953539-7953597)
chr3 (189-237)||(43613617-43613665)
[»] chr1 (9 HSPs)
chr1 (134-243)||(21761151-21761260)
chr1 (20-120)||(21761063-21761164)
chr1 (133-243)||(15470880-15470990)
chr1 (41-120)||(15470976-15471055)
chr1 (153-242)||(26088618-26088707)
chr1 (35-149)||(26088731-26088842)
chr1 (32-80)||(49599680-49599728)
chr1 (35-80)||(48569255-48569300)
chr1 (31-75)||(3657975-3658019)
[»] chr4 (5 HSPs)
chr4 (35-120)||(31930994-31931080)
chr4 (35-75)||(31323658-31323698)
chr4 (35-75)||(14331544-14331584)
chr4 (32-80)||(27758960-27759007)
chr4 (35-95)||(42420474-42420534)
[»] chr2 (6 HSPs)
chr2 (187-243)||(5726842-5726898)
chr2 (153-243)||(11804919-11805009)
chr2 (188-243)||(34233636-34233691)
chr2 (35-97)||(26618183-26618244)
chr2 (134-214)||(26618254-26618334)
chr2 (35-75)||(32734113-32734153)
[»] chr6 (4 HSPs)
chr6 (35-122)||(20243598-20243685)
chr6 (35-122)||(22137582-22137669)
chr6 (20-80)||(800489-800552)
chr6 (60-114)||(24559282-24559336)
[»] scaffold0027 (1 HSPs)
scaffold0027 (132-244)||(36152-36264)
[»] chr7 (6 HSPs)
chr7 (35-178)||(31266759-31266903)
chr7 (35-67)||(27318541-27318573)
chr7 (132-176)||(7414790-7414834)
chr7 (35-75)||(21615590-21615630)
chr7 (35-75)||(39477884-39477924)
chr7 (32-80)||(40592045-40592093)
[»] chr5 (6 HSPs)
chr5 (133-242)||(28717348-28717457)
chr5 (35-74)||(28717537-28717576)
chr5 (20-120)||(10975234-10975335)
chr5 (132-178)||(19550923-19550969)
chr5 (133-239)||(23229501-23229606)
chr5 (155-243)||(15233750-15233838)


Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 9 - 388
Target Start/End: Original strand, 1639281 - 1639659
Alignment:
Q  9 gaagaatataaggatttggttaatttgagagtttttggagatttgagatgagaaatgaggaaatgagctgctgtctgacctttaaaagggtacacaatgt 108  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  1639281 gaagaaaataaggatttg-ttaatttgagagtttttggagatttgagatgagaaatgagaaaatgagctgctgtctgacctttaaaagggcacacaatgt 1639379  T
Q  109 gacttaactcacattggcctttggcgtgatttaactcacgctgatttaacacatgtgtgacttaactcacactgggaacattttcggaagtttgattgga 208  Q
    | |||||||||| ||||||||  |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||  |||||    
T  1639380 ggcttaactcacgttggccttaagcgtgacttaactcacgctgatttaacacatgcgtgacttaactcacactgggaacatttttggaagtttagttgga 1639479  T
Q  209 agtgagtaaaacttgttggaagaagagcatttttcggcacaatatatggatgacacatcaatgacatctaagaggcttcatgttacctacaattaatgaa 308  Q
      |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  1639480 tctgagtaaaacttgttggaagaagagcattttttggcacaatatatggatgacacatcaatgacatctaagagggttcatgttacctacaattaatcaa 1639579  T
Q  309 taattttagcaaccatttggacattaagtgactgtgttcaagggccattttctaagacatattttaccaactttcattcc 388  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1639580 tatttttagcaaccatttggacattaagtgactgtgttcaagggccattttctaagacatattttaccaactttcattcc 1639659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 153 - 242
Target Start/End: Original strand, 7634451 - 7634541
Alignment:
Q  153 tttaacacatgtgtgacttaactcacactgggaacattttcggaagtttgattggaagtgagtaaaacttgttggaaga--agagcattttt 242  Q
    ||||||| |||||||||||||||||| ||||    ||||||||||||||| |||| |||||| |||||||||||| |||  |||||||||||    
T  7634451 tttaacatatgtgtgacttaactcacgctggaggtattttcggaagtttggttgg-agtgagaaaaacttgttgggagatcagagcattttt 7634541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 14264922 - 14264882
Alignment:
Q  35 gagagtttttggagatttgagatgagaaatgaggaaatgag 75  Q
    ||||| |||||||||||| ||||||||||||||||||||||    
T  14264922 gagagattttggagattttagatgagaaatgaggaaatgag 14264882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 7953597 - 7953539
Alignment:
Q  20 ggatttggttaatttgagag---tttttggagatttgagatgagaaatgaggaaatgag 75  Q
    |||||||| | |||||||||   ||||| ||||||| ||||||||||||||||||||||    
T  7953597 ggatttgggtgatttgagagagattttttgagattttagatgagaaatgaggaaatgag 7953539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 43613665 - 43613617
Alignment:
Q  189 ttttcggaagtttgattggaagtgagtaaaacttgttggaagaagagca 237  Q
    |||||||||||||| ||| || |||| ||||| ||||||||||||||||    
T  43613665 ttttcggaagtttggttgaaaatgagcaaaacgtgttggaagaagagca 43613617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 9e-22; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 134 - 243
Target Start/End: Original strand, 21761151 - 21761260
Alignment:
Q  134 gtgatttaactcacgctgatttaacacatgtgtgacttaactcacactgggaacattttcggaagtttgattggaagtgagtaaaacttgttggaagaag 233  Q
    |||| ||||||||||||| ||||||||||| |||| ||||||||| |||||  ||||||  ||||||||  || ||||||  ||||||||||||||||||    
T  21761151 gtgagttaactcacgctggtttaacacatgcgtgagttaactcacgctgggggcatttttagaagtttggctgtaagtgaacaaaacttgttggaagaag 21761250  T
Q  234 agcatttttc 243  Q
    ||||||||||    
T  21761251 agcatttttc 21761260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 21761063 - 21761164
Alignment:
Q  20 ggatttggttaatttgagag--tttttggagatttgagatgagaaatgaggaaatgagctgctgtctgacctttaaaagggtacacaatgtgacttaact 117  Q
    |||||||| | |||||||||  |||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||  || |||||||| ||||||    
T  21761063 ggatttgggtgatttgagagaatttttggagatttgagatgagaaatgaggaaatgagttgctgt-tgagctttaaaaggacacgcaatgtgagttaact 21761161  T
Q  118 cac 120  Q
    |||    
T  21761162 cac 21761164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 133 - 243
Target Start/End: Complemental strand, 15470990 - 15470880
Alignment:
Q  133 cgtgatttaactcacgctgatttaacacatgtgtgacttaactcacactgggaacattttcggaagtttgattggaagtgagtaaaacttgttggaagaa 232  Q
    ||||| ||||||||||||| ||||||||||| |||| ||||||||| || ||   ||||||| ||||||| |||| | | || |||||||||||| ||||    
T  15470990 cgtgagttaactcacgctggtttaacacatgcgtgagttaactcacgctaggggtattttcgaaagtttggttgggaataagcaaaacttgttgggagaa 15470891  T
Q  233 gagcatttttc 243  Q
    |||||||||||    
T  15470890 gagcatttttc 15470880  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 41 - 120
Target Start/End: Complemental strand, 15471055 - 15470976
Alignment:
Q  41 ttttggagatttgagatgagaaatgaggaaatgagctgctgtctgacctttaaaagggtacacaatgtgacttaactcac 120  Q
    |||||||||||| ||||| ||||||||||||||||||  ||||||| |||||||||| ||| ||| |||| |||||||||    
T  15471055 ttttggagattttagatgggaaatgaggaaatgagcttatgtctgagctttaaaaggatacgcaacgtgagttaactcac 15470976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 153 - 242
Target Start/End: Complemental strand, 26088707 - 26088618
Alignment:
Q  153 tttaacacatgtgtgacttaactcacactgggaacattttcggaagtttgattggaagtgagtaaaacttgttggaagaagagcattttt 242  Q
    |||||||||||  ||| |||||||||||   |  ||||||||||||||||||||| | |||| |||||||||||| ||||||| ||||||    
T  26088707 tttaacacatgcatgagttaactcacaccatgggcattttcggaagtttgattgggaatgagcaaaacttgttgggagaagagtattttt 26088618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 149
Target Start/End: Complemental strand, 26088842 - 26088731
Alignment:
Q  35 gagagtttttggagatttgagatgagaaatgaggaaatgagctgctgtctgacctttaaaagggtacacaatgtgacttaactcacattggcctttggcg 134  Q
    ||||| ||||||||||   |||||||||||||| ||||||| |  ||||||||||||||||||  || ||  |||| ||||||  |  |||||||  |||    
T  26088842 gagagattttggagat---agatgagaaatgagaaaatgaggttatgtctgacctttaaaaggacacgcagcgtgagttaacttgcgctggccttctgcg 26088746  T
Q  135 tgatttaactcacgc 149  Q
    |||||||||||||||    
T  26088745 tgatttaactcacgc 26088731  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 49599680 - 49599728
Alignment:
Q  32 tttgagagtttttggagatttgagatgagaaatgaggaaatgagctgct 80  Q
    ||||||| ||||| ||||||| |||||||||||||||||||||| ||||    
T  49599680 tttgagatttttttgagattttagatgagaaatgaggaaatgaggtgct 49599728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 48569255 - 48569300
Alignment:
Q  35 gagagtttttggagatttgagatgagaaatgaggaaatgagctgct 80  Q
    ||||| |||| ||||||| |||||||||||||||||||||| ||||    
T  48569255 gagagatttttgagattttagatgagaaatgaggaaatgaggtgct 48569300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 3658019 - 3657975
Alignment:
Q  31 atttgagagtttttggagatttgagatgagaaatgaggaaatgag 75  Q
    |||||||| ||||| ||||||| |||||||||||||| |||||||    
T  3658019 atttgagatttttttgagattttagatgagaaatgagaaaatgag 3657975  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 35 - 120
Target Start/End: Complemental strand, 31931080 - 31930994
Alignment:
Q  35 gagagtttttggagatttgagatgagaaatgaggaaatgagctgc-tgtctgacctttaaaagggtacacaatgtgacttaactcac 120  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| ||| || |||||||||||  ||||   ||||||||||||||    
T  31931080 gagagtttttggagatttgagatgagaaatgaggaaatgagttgcttgtatggcctttaaaaggacacacggcgtgacttaactcac 31930994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 31323698 - 31323658
Alignment:
Q  35 gagagtttttggagatttgagatgagaaatgaggaaatgag 75  Q
    ||||| |||||||||||| ||||||||||||||||||||||    
T  31323698 gagagattttggagattttagatgagaaatgaggaaatgag 31323658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 14331544 - 14331584
Alignment:
Q  35 gagagtttttggagatttgagatgagaaatgaggaaatgag 75  Q
    ||||| |||| ||||||| ||||||||||||||||||||||    
T  14331544 gagagatttttgagattttagatgagaaatgaggaaatgag 14331584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 27759007 - 27758960
Alignment:
Q  32 tttgagagtttttggagatttgagatgagaaatgaggaaatgagctgct 80  Q
    ||||||| |||||| |||||| |||||||||||||||||||||| ||||    
T  27759007 tttgagaatttttg-agattttagatgagaaatgaggaaatgaggtgct 27758960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 42420534 - 42420474
Alignment:
Q  35 gagagtttttggagatttgagatgagaaatgaggaaatgagctgctgtctgacctttaaaa 95  Q
    ||||| |||||||||||| ||||| |||||||| ||||  | | |||||||||||||||||    
T  42420534 gagagattttggagattttagatgggaaatgagaaaatagggttctgtctgacctttaaaa 42420474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 5726898 - 5726842
Alignment:
Q  187 cattttcggaagtttgattggaagtgagtaaaacttgttggaagaagagcatttttc 243  Q
    |||||||||||||||| |||  |||||||||||||||||||||||||||||||||||    
T  5726898 cattttcggaagtttggttgtgagtgagtaaaacttgttggaagaagagcatttttc 5726842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 243
Target Start/End: Complemental strand, 11805009 - 11804919
Alignment:
Q  153 tttaacacatgtgtgacttaactcacactgggaacattttcggaagtttgattggaagtgagtaaaacttgttggaagaagagcatttttc 243  Q
    ||||| |||||||||| ||||||||| || ||   ||||||| ||||||| || | ||| ||||||||||| ||| |||||||||||||||    
T  11805009 tttaatacatgtgtgagttaactcacgctaggggtattttcgaaagtttggttaggagtaagtaaaacttgctgggagaagagcatttttc 11804919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 243
Target Start/End: Original strand, 34233636 - 34233691
Alignment:
Q  188 attttcggaagtttgattggaagtgagtaaaacttgttggaagaagagcatttttc 243  Q
    ||||| ||||||||| ||||||||||| ||||| || ||||||||||| |||||||    
T  34233636 attttgggaagtttggttggaagtgagcaaaacgtgatggaagaagagaatttttc 34233691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 26618183 - 26618244
Alignment:
Q  35 gagagtttttggagatttgagatgagaaatgaggaaatgagctgctgtctgacctttaaaagg 97  Q
    ||||| |||||||||||| ||||| |||| ||||||||||| |  ||||||||||||||||||    
T  26618183 gagagattttggagattttagatgtgaaa-gaggaaatgaggttatgtctgacctttaaaagg 26618244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 134 - 214
Target Start/End: Original strand, 26618254 - 26618334
Alignment:
Q  134 gtgatttaactcacgctgatttaacacatgtgtgacttaactcacactgggaacattttcggaagtttgattggaagtgag 214  Q
    |||| ||||||||| ||| ||||||||||| |||| ||||||||| |  ||  ||||||| |||||||| |||| ||||||    
T  26618254 gtgagttaactcacactggtttaacacatgcgtgagttaactcacgccaggggcattttcagaagtttggttgggagtgag 26618334  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 32734153 - 32734113
Alignment:
Q  35 gagagtttttggagatttgagatgagaaatgaggaaatgag 75  Q
    ||||| |||| ||||||| ||||||||||||||||||||||    
T  32734153 gagagatttttgagattttagatgagaaatgaggaaatgag 32734113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 35 - 122
Target Start/End: Complemental strand, 20243685 - 20243598
Alignment:
Q  35 gagagtttttggagatttgagatgagaaatgaggaaatgagctgctgtctgacctttaaaagggtacacaatgtgacttaactcacat 122  Q
    |||||||| | ||||||| | ||| |||||||||||||||| || |||||||  ||||||||| ||||||| ||||||||||||||||    
T  20243685 gagagtttgtagagattttaaatgtgaaatgaggaaatgagttgttgtctgatttttaaaaggatacacaacgtgacttaactcacat 20243598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 35 - 122
Target Start/End: Complemental strand, 22137669 - 22137582
Alignment:
Q  35 gagagtttttggagatttgagatgagaaatgaggaaatgagctgctgtctgacctttaaaagggtacacaatgtgacttaactcacat 122  Q
    |||||||| | ||||||| | ||| |||||||||||||||| || |||||||  ||||||||| ||||||| ||||||||||||||||    
T  22137669 gagagtttgtagagattttaaatgtgaaatgaggaaatgagttgttgtctgatttttaaaaggatacacaacgtgacttaactcacat 22137582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 800552 - 800489
Alignment:
Q  20 ggatttggttaatttgagag---tttttggagatttgagatgagaaatgaggaaatgagctgct 80  Q
    |||||||| | |||||||||   ||||| ||||||| |||||||||||||||||||||||||||    
T  800552 ggatttgggtgatttgagagagattttttgagattttagatgagaaatgaggaaatgagctgct 800489  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 24559336 - 24559282
Alignment:
Q  60 gaaatgaggaaatgagctgctgtctgacctttaaaagggtacacaatgtgactta 114  Q
    ||||||||||||| ||||| ||||||| ||||||||||  || ||||||||||||    
T  24559336 gaaatgaggaaataagctgttgtctgatctttaaaaggacacgcaatgtgactta 24559282  T

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Target: scaffold0027 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 132 - 244
Target Start/End: Complemental strand, 36264 - 36152
Alignment:
Q  132 gcgtgatttaactcacgctgatttaacacatgtgtgacttaactcacactgggaacattttcggaagtttgattggaagtgagtaaaacttgttggaaga 231  Q
    |||||| |||||||||||    ||||||||||  ||| |||||||||||  ||  |||||||| |||||||||||| |||||  |||||||||||  |||    
T  36264 gcgtgacttaactcacgccaggttaacacatgcttgagttaactcacaccagggtcattttcgaaagtttgattgggagtgaacaaaacttgttgagaga 36165  T
Q  232 agagcatttttcg 244  Q
    |||||||||||||    
T  36164 agagcatttttcg 36152  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 35 - 178
Target Start/End: Complemental strand, 31266903 - 31266759
Alignment:
Q  35 gagagtttttggagatttg-agatgagaaatgaggaaatgagctgctgtctgacctttaaaagggtacacaatgtgacttaactcacattggcctttggc 133  Q
    ||||| ||||||||||||  ||||| |||||||||||||||  |  |||||||| |||||||||  ||||| ||||| |||||| ||  |||||||  ||    
T  31266903 gagagattttggagattttcagatgggaaatgaggaaatgaagttttgtctgacttttaaaaggacacacagtgtgagttaacttacgctggccttcagc 31266804  T
Q  134 gtgatttaactcacgctgatttaacacatgtgtgacttaactcac 178  Q
    |||| |||| |||||| |  |||||||||| |||| |||||||||    
T  31266803 gtgacttaattcacgcaggattaacacatgcgtgagttaactcac 31266759  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 27318541 - 27318573
Alignment:
Q  35 gagagtttttggagatttgagatgagaaatgag 67  Q
    |||||||||||||||||||||||||||||||||    
T  27318541 gagagtttttggagatttgagatgagaaatgag 27318573  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 132 - 176
Target Start/End: Original strand, 7414790 - 7414834
Alignment:
Q  132 gcgtgatttaactcacgctgatttaacacatgtgtgacttaactc 176  Q
    |||||| ||||||||||| || ||||||||||||||| |||||||    
T  7414790 gcgtgagttaactcacgcagaattaacacatgtgtgagttaactc 7414834  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 21615590 - 21615630
Alignment:
Q  35 gagagtttttggagatttgagatgagaaatgaggaaatgag 75  Q
    ||||| |||| ||||||| ||||||||||||||||||||||    
T  21615590 gagagatttttgagattttagatgagaaatgaggaaatgag 21615630  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 39477884 - 39477924
Alignment:
Q  35 gagagtttttggagatttgagatgagaaatgaggaaatgag 75  Q
    ||||| |||| ||||||| ||||||||||||||||||||||    
T  39477884 gagagatttttgagattttagatgagaaatgaggaaatgag 39477924  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 40592093 - 40592045
Alignment:
Q  32 tttgagagtttttggagatttgagatgagaaatgaggaaatgagctgct 80  Q
    ||||||| ||||| ||||||| |||| ||||||||||||||||| ||||    
T  40592093 tttgagatttttttgagattttagatcagaaatgaggaaatgaggtgct 40592045  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 133 - 242
Target Start/End: Complemental strand, 28717457 - 28717348
Alignment:
Q  133 cgtgatttaactcacgctgatttaacacatgtgtgacttaactcacactgggaacattttcggaagtttgattggaagtgagtaaaacttgttggaagaa 232  Q
    ||||| |||| ||||  ||||||||||||||||||||||||||||    |||  || ||| | ||||||| |||| |||||| |||||||||||| ||||    
T  28717457 cgtgagttaagtcacattgatttaacacatgtgtgacttaactcatgtggggggcacttttgaaagtttggttgggagtgagcaaaacttgttgggagaa 28717358  T
Q  233 gagcattttt 242  Q
    || |||||||    
T  28717357 gatcattttt 28717348  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 35 - 74
Target Start/End: Complemental strand, 28717576 - 28717537
Alignment:
Q  35 gagagtttttggagatttgagatgagaaatgaggaaatga 74  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  28717576 gagagtttttggatatttgagatgagaaatgaggaaatga 28717537  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 10975335 - 10975234
Alignment:
Q  20 ggatttggttaatttgagagt--ttttggagatttgagatgagaaatgaggaaatgagctgctgtctgacctttaaaagggtacacaatgtgacttaact 117  Q
    |||||||||| |||||||||   |||||||||||| ||| | |||| ||||||||||| ||||||||||  |||||||||  || |||  ||||||||||    
T  10975335 ggatttggttgatttgagagaaattttggagattttagaagtgaaa-gaggaaatgagttgctgtctgatttttaaaaggacacgcaacatgacttaact 10975237  T
Q  118 cac 120  Q
    |||    
T  10975236 cac 10975234  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 19550923 - 19550969
Alignment:
Q  132 gcgtgatttaactcacgctgatttaacacatgtgtgacttaactcac 178  Q
    |||||||||||||||||| ||||||||||||  |||| |||||||||    
T  19550923 gcgtgatttaactcacgccgatttaacacatacgtgagttaactcac 19550969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 133 - 239
Target Start/End: Original strand, 23229501 - 23229606
Alignment:
Q  133 cgtgatttaactcacgctgatttaacacatgtgtgacttaactcacactgggaacattttcggaagtttgattggaagtgagtaaaacttgttggaagaa 232  Q
    ||||| ||||| ||||| || ||||||||||  ||| |||||||||||   ||||||||||||||||||| |||  | |||  ||||  |||||||||||    
T  23229501 cgtgagttaacccacgcagaattaacacatgcatgagttaactcacac-atgaacattttcggaagtttggttgagaatgaacaaaatatgttggaagaa 23229599  T
Q  233 gagcatt 239  Q
    |||||||    
T  23229600 gagcatt 23229606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 155 - 243
Target Start/End: Complemental strand, 15233838 - 15233750
Alignment:
Q  155 taacacatgtgtgacttaactcacactgggaacattttcggaagtttgattggaagtgagtaaaacttgttggaagaagagcatttttc 243  Q
    ||||||||  |||||||||||||| ||| || ||||||||||||| |  |||| |||||| ||||  |  ||| |||||||||||||||    
T  15233838 taacacatacgtgacttaactcacgctgtgagcattttcggaagtgtagttgggagtgagcaaaatgtaatgggagaagagcatttttc 15233750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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