View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18597_low_8 (Length: 512)
Name: NF18597_low_8
Description: NF18597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18597_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 116 - 450
Target Start/End: Complemental strand, 21624113 - 21623778
Alignment:
| Q |
116 |
gcattaccaactcatttccatgctcaatagcagcatctttatagctactcttgttaccaggactactaccacaaaaaacacaaatcctcttaaactttga |
215 |
Q |
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| T |
21624113 |
gcattaccaactcatttccaagctcaatagcagcatctttatagctactcttgttaccaggactactaccacaaaaaacacaaatcctcttaaactttga |
21624014 |
T |
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| Q |
216 |
ttctttcatctcactttcttcctccatctctttatttcagatcaattccaa-ccttcacaatttgtatgcacaacacctatatatagagaaatgtagaag |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21624013 |
ttctttcatctcactttcttcctccatctctttatttcagatcaattccaaaccttcacaatttgtatgcacaacacctatatatagagaaatgtagaag |
21623914 |
T |
|
| Q |
315 |
catgattacatgatgagcaataacgatgatgactccttacaaattgtacacgagggaagaattgatacacataattcataacacagacgtgtgtgtttgt |
414 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21623913 |
catgattacatgatgagcaatagcgatgatgactccttacaaattgtacacgagggaagaattgatacacataattcataacacagacgtgtgtgtttgt |
21623814 |
T |
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| Q |
415 |
tttctactttaattaatatggtcccctgattgtacc |
450 |
Q |
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| T |
21623813 |
tttctactttaattaatatggtcccctgattgtacc |
21623778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 21624209 - 21624142
Alignment:
| Q |
6 |
gacatcatcatattacaaacagattttgtagggttgagttttaccccgtctaaattttaagaaagaaa |
73 |
Q |
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| T |
21624209 |
gacatcattatattacaaacagattttgtagggttgagttttacccggtctaaattttaagaaagaaa |
21624142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 118 - 216
Target Start/End: Original strand, 40466130 - 40466228
Alignment:
| Q |
118 |
attaccaactcatttccatgctcaatagcagcatctttatagctactcttgttaccaggactactaccacaaaaaacacaaatcctcttaaactttgat |
216 |
Q |
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|||||||| || |||||| | |||||||||||||| ||||||||| | ||||||||||| |||||||||||||| |||||||| ||||||||||||||| |
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| T |
40466130 |
attaccaattcttttccaagttcaatagcagcatccttatagctagttttgttaccagggctactaccacaaaacacacaaattctcttaaactttgat |
40466228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 120 - 215
Target Start/End: Original strand, 28271927 - 28272022
Alignment:
| Q |
120 |
taccaactcatttccatgctcaatagcagcatctttatagctactcttgttaccaggactactaccacaaaaaacacaaatcctcttaaactttga |
215 |
Q |
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|||||| ||||||||| | ||||| |||||||||| ||| ||||| || || ||||||||||| |||||||| ||||||| |||||| |||||||| |
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| T |
28271927 |
taccaattcatttccaagttcaatggcagcatcttgataactacttttcttgccaggactacttccacaaaagacacaaaccctcttgaactttga |
28272022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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