View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18598_high_20 (Length: 385)
Name: NF18598_high_20
Description: NF18598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18598_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 139 - 376
Target Start/End: Original strand, 34608449 - 34608683
Alignment:
| Q |
139 |
ccatagttgttatgctcacttttaaatcttttgttttcgtacaagttaatcaagtccaagaaatgtttgatcattgatagttgtagtgccttggtaaatg |
238 |
Q |
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| T |
34608449 |
ccatcgttgttatgctcgcttttaaatcttttgttttcgtacaagttaatcaagtccaagaaatgtttgatcattgatagttgtagtgccttggtaaatg |
34608548 |
T |
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| Q |
239 |
aatttgaaagattaaaaaatgatatggttggtctgagaggatgattattgagctgcttagatatgccgcctattgaggttgatatgtcgatatgcatgtc |
338 |
Q |
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| T |
34608549 |
aatttgaaagattaaaaaatgatatggttggtctgagaggatg---attgagctgcttagatatgccgcctattgaggttgatatgccgatatgcatgtt |
34608645 |
T |
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| Q |
339 |
gtctgcctggttctgctgaactatggtgaggtgatgat |
376 |
Q |
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| T |
34608646 |
gtctgcctggttctgctgaattgtggtgaggtgatgat |
34608683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 34608253 - 34608391
Alignment:
| Q |
1 |
ctcaaacagaataacatagttcaggtagaatagtttttgccaacactgtgtagctgaattaacaagttgtaattgacttgtgctcccagatgtagcaaca |
100 |
Q |
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| T |
34608253 |
ctcaaacagaataacatagttcagttagaatagtttttgccaacactgtgtagctgaattaacaagttgtaattgacttgtgatcccagatgtagcaaca |
34608352 |
T |
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| Q |
101 |
tttggatgctccagagtgctgcaacaccttgcttgcatc |
139 |
Q |
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| T |
34608353 |
tttggatgctccagagtgctgcaacaccttgcttgcatc |
34608391 |
T |
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