View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18598_high_30 (Length: 299)
Name: NF18598_high_30
Description: NF18598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18598_high_30 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 37696447 - 37696735
Alignment:
| Q |
1 |
gcgggtccccactattcaacccatacataacatgcacatcaaatggaacattagaccaactcatcctcaaaactcacacatcctcataccctataacctc |
100 |
Q |
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| T |
37696447 |
gcgggtccccactattcaacccatacataacatgcacatcaaatggaacattagaccaactcatcctcaaaactcacacatcctcataccctataacctc |
37696546 |
T |
|
| Q |
101 |
catttcatacaccacttccactctaatactcacaccaccctacatgtctacttgcactaccatgcaaacctcaccaaactttggcatagatttaactgca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37696547 |
catttcatacaccacttccactctaatactcacaccaccctacatgtctacttgcactaccatgcaaacctcaccaaactttggcatagatttaactgca |
37696646 |
T |
|
| Q |
201 |
ccattccaaatatcttcctccactttcatcctcctctattgccaagtaaaaagttcaaccatttgtgacacttcttttgattacctttg |
289 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37696647 |
ccattccaaatatcttcctccactttcatcctcctccattgccaagtaaaaagttcaaccatttgtgacacttcttttgattacctttg |
37696735 |
T |
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