View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18598_high_4 (Length: 649)
Name: NF18598_high_4
Description: NF18598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18598_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 3 - 282
Target Start/End: Original strand, 732108 - 732387
Alignment:
| Q |
3 |
ttatactataaggagagagggagtagtagttacttagttaatgttttgtgggtttgcccnnnnnnnnnnnnnnnnnnnnnnnngttaatgttttgtgggg |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
732108 |
ttatactataaggagagagggagtagtagttacttagttaatgttttgtgggtttgcacaaaaataaaaaatagtagtaaaaagttaatgttttgtgggg |
732207 |
T |
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| Q |
103 |
tcaaggtgatagagccgaatattttgtacttgccaagtcattcgcggaatatttttctctcgcaccaaatcgcattttcctttaaaaccctatcccatat |
202 |
Q |
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| T |
732208 |
tcaaggtgatagagccgaatattttgaacttgccaagtcattcacggaatatttttctctcgcaccaaatcgcattttcctttaaaaccctatcccatat |
732307 |
T |
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| Q |
203 |
atgaacgatagaacaatagcgtcttcgttttgtttgtacgattctatatcctaataaactcgacacgatgatgcaagcag |
282 |
Q |
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| T |
732308 |
acgaacgatagaacaatagcgtcttcgttttgtttgtacgattctatattctaataaactcgacacgatgatgcaagcag |
732387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 283 - 452
Target Start/End: Original strand, 732460 - 732629
Alignment:
| Q |
283 |
gtgaattgtccattctatgattgttcagtttccttgctcaatgataggtttgaaaccgtgatacatacagagtgtcccgtttgtcataggttattttgtg |
382 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
732460 |
gtgaattgtccattctatgattgttcagtttcgttgctcaatgataggtttgaaaccgtgatacgtacatagtgtcccgtttgtcataggttattttgtg |
732559 |
T |
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| Q |
383 |
cacaatgcaaagttcgttggctcacctgtcaacaattccaacctaaatgctctctacatcatcaaatctt |
452 |
Q |
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| T |
732560 |
cacaatgcaaagttcgttggctcacctgtcaacaattccaacctaaatgctctctacatcatcaaatctt |
732629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 3e-22; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 86 - 189
Target Start/End: Complemental strand, 8393068 - 8392957
Alignment:
| Q |
86 |
gttaatgttttgtggggtcaaggtgatagagccgaatattttgtacttgccaagtcattcgcggaat--------atttttctctcgcaccaaatcgcat |
177 |
Q |
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| T |
8393068 |
gttaatgttttgtgggatcaaggtgatagagccgaatattttgaacttgtcaagtcattcgctcaattccgacgaatttttctctcgcaccaaaaagcat |
8392969 |
T |
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| Q |
178 |
tttcctttaaaa |
189 |
Q |
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| T |
8392968 |
tttcctttaaaa |
8392957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 86 - 147
Target Start/End: Original strand, 15578324 - 15578385
Alignment:
| Q |
86 |
gttaatgttttgtggggtcaaggtgatagagccgaatattttgtacttgccaagtcattcgc |
147 |
Q |
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| T |
15578324 |
gttaatgttttgtggggtcaaggtgatagagccgaatattttgaacttgctaagtcattcgc |
15578385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 86 - 147
Target Start/End: Complemental strand, 36846615 - 36846554
Alignment:
| Q |
86 |
gttaatgttttgtggggtcaaggtgatagagccgaatattttgtacttgccaagtcattcgc |
147 |
Q |
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| T |
36846615 |
gttaatgttttgtgggatcaaggtgatagagccgaatattttgaacttgccaagtcattcgc |
36846554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 86 - 185
Target Start/End: Original strand, 44462826 - 44462933
Alignment:
| Q |
86 |
gttaatgttttgtggggtcaaggtgatagagccgaatattttgtacttgccaagtcattcgcggaat--------atttttctctcgcaccaaatcgcat |
177 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||| ||| ||||||||||||||||||| |||| |
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| T |
44462826 |
gttaatgttttgtgggatcaaggtgatagagccgaatattttgaacttgccaaatcattcgctcaattccgacgaatttttctctcgcaccaaaaagcat |
44462925 |
T |
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| Q |
178 |
tttccttt |
185 |
Q |
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|||||||| |
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| T |
44462926 |
tttccttt |
44462933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 566 - 626
Target Start/End: Original strand, 4109268 - 4109328
Alignment:
| Q |
566 |
cctctgttcatgcatcaatttattgaagaagtcattgatatcgctggtgatggtcattgtg |
626 |
Q |
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| T |
4109268 |
cctctgttcatgcatcaatttattcaaaatgtcgttggtgtcgaaggtgatggtcattgtg |
4109328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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