View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18598_high_40 (Length: 237)
Name: NF18598_high_40
Description: NF18598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18598_high_40 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 10 - 221
Target Start/End: Complemental strand, 3593805 - 3593594
Alignment:
| Q |
10 |
agcaaaggatgcatggttcggtatttgatagaatgaattattggaccaagaaatttccaatttcgcgctgtaccatatcatcatatcattctgctaatac |
109 |
Q |
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| T |
3593805 |
agcaaaggatgcatggttcggtatttgatagaatgaattattggaccaagaaatttccaatttctcgctgtaccatatcatgatatcattctgctaatac |
3593706 |
T |
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| Q |
110 |
acactgcagtttagacaagaattcaagtacgtgtttaacctaagttctctggttatttgattcatgcaggaaaggatggttgggccgctccacgtctcaa |
209 |
Q |
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| T |
3593705 |
acactgcagtttagacaagaattcaagtacgtgtttaacctaagttctctggttatttgattcatgcaggaaaggatggttgggccgctccacgtctcaa |
3593606 |
T |
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| Q |
210 |
agacgcagattt |
221 |
Q |
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|||||||||||| |
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| T |
3593605 |
agacgcagattt |
3593594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 48 - 221
Target Start/End: Complemental strand, 3589107 - 3588934
Alignment:
| Q |
48 |
tattggaccaagaaatttccaatttcgcgctgtaccatatcatcatatcattctgctaatacacactgcagtttagacaagaattcaagtacgtgtttaa |
147 |
Q |
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| T |
3589107 |
tattggaccaagaaatttccaatttcgcgctgtaccatatcatgatatcattctgctaatacacactgcagtttagacaagaattcaagtacgtgtttaa |
3589008 |
T |
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| Q |
148 |
cctaagttctctggttatttgattcatgcaggaaaggatggttgggccgctccacgtctcaaagacgcagattt |
221 |
Q |
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| T |
3589007 |
cctaagttctctggttatttgattcatgcaggaaaagatggttgggccgctccacgtctcaaagacgcagattt |
3588934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 104 - 221
Target Start/End: Complemental strand, 28933252 - 28933132
Alignment:
| Q |
104 |
taatacacactgcagtttagacaaga---attcaagtacgtgtttaacctaagttctctggttatttgattcatgcaggaaaggatggttgggccgctcc |
200 |
Q |
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||||||| ||||||||||||||| | || |||||| | ||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
28933252 |
taatacatactgcagtttagacagaacaaatgcaagtaggagtttaactaaagttctctggttatttgagtcatgcaggaaaggatggttgtgccgctcc |
28933153 |
T |
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| Q |
201 |
acgtctcaaagacgcagattt |
221 |
Q |
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| T |
28933152 |
acgtctcaaagacgcagattt |
28933132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 112 - 221
Target Start/End: Original strand, 35715562 - 35715675
Alignment:
| Q |
112 |
actgcagtttagaca--agaatt-caagtacgtgtttaacctaagttctctggttattt-gattcatgcaggaaaggatggttgggccgctccacgtctc |
207 |
Q |
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||||||||||||||| |||| | |||||| || |||||| ||||||||||||||||| | | ||||||||||||||||| |||||||||||||||||| |
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| T |
35715562 |
actgcagtttagacagaagaaatgcaagtaggtttttaactgaagttctctggttattttggtgcatgcaggaaaggatggctgggccgctccacgtctc |
35715661 |
T |
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| Q |
208 |
aaagacgcagattt |
221 |
Q |
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|||||||||||||| |
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| T |
35715662 |
aaagacgcagattt |
35715675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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