View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18598_high_41 (Length: 228)
Name: NF18598_high_41
Description: NF18598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18598_high_41 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 9 - 213
Target Start/End: Original strand, 43887053 - 43887256
Alignment:
| Q |
9 |
aatttgtttcataggaaaatattagcactaagataaatatgaagattgcataaaaaagtaaaacacacacacatgtatataaaggatgtgaaaattgata |
108 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43887053 |
aatttgtttcataggaaaatattagcagtaagataaatatgaagattgcataaaa-agtaaaacacacacacatgtatataaaggatgtgaaaattgata |
43887151 |
T |
|
| Q |
109 |
taggaattaaccttgggatggatgatttcaagaagttctgccccaactcctgaatcttcaatttcagattggtagctgattttcaagaaacaaaatagta |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43887152 |
taggaattaaccttgggatggatgatttcaagaagttctgccccaactcctgaatcttcaatttcagattggtagctgattttcaagaaacaaaatagta |
43887251 |
T |
|
| Q |
209 |
agaaa |
213 |
Q |
| |
|
||||| |
|
|
| T |
43887252 |
agaaa |
43887256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University