View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18598_low_1 (Length: 889)
Name: NF18598_low_1
Description: NF18598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18598_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 596 - 873
Target Start/End: Original strand, 35339564 - 35339839
Alignment:
| Q |
596 |
aatgttagcgtaaccaattctacaataataacccttactaaatttgtcattatgatcccttgttaaccctccaaatctaggttcacccgggtttgttaag |
695 |
Q |
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| T |
35339564 |
aatgttagcgtaaccaattctacaataataacccttactgaatttgtcattatgatcccttgttaaccctccaaatctagcttcagccgggtttgttaag |
35339663 |
T |
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| Q |
696 |
gcactctcatccacattcaacatcttgaggtgccttggagagggaccgaactgagcagggaaactataagcacaaagagcatccatatggctaaatgatt |
795 |
Q |
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| T |
35339664 |
gcactctcatccacattcaacatcttgaggtgccttggag--ggaccgaactgagcagggaaactataagcacaaagaacatccatatggctaaatgatt |
35339761 |
T |
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| Q |
796 |
atgccaagcttgttaataggttcacaagtccattgaagaagagaaatagacaatgcactataatttcatgctcaatat |
873 |
Q |
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| T |
35339762 |
atgccaagcttgttaataggttcacaagtccattgaagaagagaaatagacaatgcactataatttcatgctcaatat |
35339839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 332 - 556
Target Start/End: Original strand, 35339345 - 35339567
Alignment:
| Q |
332 |
gtatgaaatccaatgacatctgcgagaaggaataactgaagctcaatcggaggattgttgcgaaaagtatgctgaaatcgcacggtccaatccttgggca |
431 |
Q |
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| T |
35339345 |
gtatgaaatccaatgacatctgcgagaagaaataactgaagctcaattggaggattattgcgaaaagtatgctgaaatcgcatggtccaatccttgggca |
35339444 |
T |
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| Q |
432 |
agaattgacgaattatctcaatctcatttccaatatggtgatatccaacacatctgccgtttggaccaagcgaatggtttgaagggaacctaagtaacaa |
531 |
Q |
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| T |
35339445 |
agaattgacgaattatctcaatctcatttctaatatggtgataacca--atatctgccgtttggaccaagcgaatggtttgaagggaacctaagtaacaa |
35339542 |
T |
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| Q |
532 |
ttagccctacttcccaacaaaaatg |
556 |
Q |
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| T |
35339543 |
ttagccctacttcccaacaaaaatg |
35339567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 7e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 392 - 519
Target Start/End: Complemental strand, 29712015 - 29711890
Alignment:
| Q |
392 |
cgaaaagtatgctgaaatcgcacggtccaatccttgggcaagaattgacgaattatctcaatctcatttccaatatggtgatatccaacacatctgccgt |
491 |
Q |
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| T |
29712015 |
cgaaaagtatgttgaagtcgcacggtccaatccttggctaataattgacgaattatttcaatctcattcccataatggtgatatcca--acctctgtcgt |
29711918 |
T |
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| Q |
492 |
ttggaccaagcgaatggtttgaagggaa |
519 |
Q |
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| T |
29711917 |
ttggaccaagcgaatggtttgaagggaa |
29711890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 1e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 541 - 672
Target Start/End: Original strand, 8752623 - 8752751
Alignment:
| Q |
541 |
cttcccaacaaaaatgaatggcgtgaaacaaagcaatgatctcggcgtcaataagaatgttagcgtaaccaattctacaataataacccttactaaattt |
640 |
Q |
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|||||||||||| ||||||| ||||||||||||| ||||||||||| | || ||||||||| ||||||||||||| |||||||||||||| | || || |
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| T |
8752623 |
cttcccaacaaagatgaatgtcgtgaaacaaagccatgatctcggcataaa---gaatgttagagtaaccaattctataataataacccttaatgaagtt |
8752719 |
T |
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| Q |
641 |
gtcattatgatcccttgttaaccctccaaatc |
672 |
Q |
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| T |
8752720 |
gccattatgatcccttattaaccctacaaatc |
8752751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 392 - 481
Target Start/End: Original strand, 8735014 - 8735103
Alignment:
| Q |
392 |
cgaaaagtatgctgaaatcgcacggtccaatccttgggcaagaattgacgaattatctcaatctcatttccaatatggtgatatccaaca |
481 |
Q |
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| T |
8735014 |
cgaaaagtaagttgatgtcgcacggtcgaattcttgaccaagaactaacgaatcatctcaatctcatttccataatcgtgatatccaaca |
8735103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 430 - 519
Target Start/End: Complemental strand, 43097269 - 43097182
Alignment:
| Q |
430 |
caagaattgacgaattatctcaatctcatttccaatatggtgatatccaacacatctgccgtttggaccaagcgaatggtttgaagggaa |
519 |
Q |
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| T |
43097269 |
caagaattaacgaattatcacaatctcgttcccataatagtgatatcca--acatctgccatttgaacctaacgaatggtttgaagggaa |
43097182 |
T |
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