View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18598_low_11 (Length: 548)
Name: NF18598_low_11
Description: NF18598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18598_low_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Complemental strand, 43689235 - 43688702
Alignment:
| Q |
1 |
tcataattattgataatatagtaaatcaatgagttaccttaaacagaaaaacaggccctaaattggcaaaatccagttaactatccttaatgtggttatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
43689235 |
tcataattattgataatatagtaaatcaatgagttaccttaaacagaaaaacaggccctaaattggcaaaatccagttaactctccttaatgtggttatg |
43689136 |
T |
|
| Q |
101 |
aaaaactagcatccctttggtatataaacacataatactgaaagccataaaaaacctcacctcccatgatgctagacccttcatatagggaggaagacat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43689135 |
aaaaactagcatccctttggtatataaacacataatactgaaagccataaaaaacctcacctcccatgatgctagacccttcatatagggaggaagacat |
43689036 |
T |
|
| Q |
201 |
tcaaattcgctctttaatatctttaaagtggagctggtagcttcagctgactccaaattctcgttgtctccctctaaattaggtactctgttcactcata |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43689035 |
tcaaattcgctctttaatatctttaaagtggagctggtagcttcagctgactccaaattctcgttgtctccctctaaattaggtactctgttcactcata |
43688936 |
T |
|
| Q |
301 |
acttgaggagtgagaatcatgcaggtattttaaaaatagaagtgcaaaaagcccctcaacagcaaatgatatccacaaaattaaacttacttctcaagtt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43688935 |
acttgaggagtgagaatcatgcaggtattttaaaaatagaagtgcaaaaagcccctcaacagcaaatgatatccacaaaattaaacttacttctcaagtt |
43688836 |
T |
|
| Q |
401 |
cttgtgaagatacattacctgcaagcattgataaagaaagatagtggcaaaaatggaattagcaacatgaattaatcaagaagccaggtctagttttcat |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43688835 |
cttgtgaagatacattacctgcaagcattgataaagaaagatagtggcaaaaatggaattagcaacatgaattaatcaagaagccaggtctagttttcat |
43688736 |
T |
|
| Q |
501 |
ggaatcaacaatgtggctagtgcccacaaaaact |
534 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |
|
|
| T |
43688735 |
ggaatcaacaatgttgctagtgcccacaaaaact |
43688702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University