View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18598_low_12 (Length: 546)
Name: NF18598_low_12
Description: NF18598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18598_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 10 - 528
Target Start/End: Original strand, 44284706 - 44285225
Alignment:
| Q |
10 |
aagaatatggtttaaggggccagttaggaatattgatgctcaaaatggcaaagtataattcttgtaaagtttgaagaataattgatggaatattctttat |
109 |
Q |
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| T |
44284706 |
aagaaaatggtttaaggggccagttaggaatattgatgctcaaaatggcaaagtataattcttgtaaagtttgaagaataattgatggaatattctttat |
44284805 |
T |
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| Q |
110 |
ctcatgcttgttacttttgacttgtacattctatggtcaacaatattgtttaaattttcatgtcaatattcagtctta-tagttcaaagaggttagtaag |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
44284806 |
ctcatgcttgttacttttgacttgtacattctatggtcaacaatattgtttaaattttcatgtcaatattcagtcttaatagttcaaagaggtcagtaag |
44284905 |
T |
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| Q |
209 |
aaaaatatttcacttgcnnnnnnnatactttttataatttcttaattaaaatattgatgccgccgattatagttcatacatactatgccgcacgagcact |
308 |
Q |
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||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44284906 |
aaaaatatttcacttgctttttttatacttcttataatttcttaattaaaatattgatgccgccgattatagttcatacatactatgccgcacgagcact |
44285005 |
T |
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| Q |
309 |
tcaaattaaaggtgtgtccggtaattgacaagcatactagtgtcactctcacttgtaacactgctcaaccattcctttgcttcctccaccttagcctaaa |
408 |
Q |
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| T |
44285006 |
tcaaattaaagttgtgtccggtaattgacaagcatactagtgtcactctcacttgtaacactgctcaaccattcctttgcttcctccaccttagcctaaa |
44285105 |
T |
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| Q |
409 |
aacatgcaaaagtgctcctagcattatgttcttctgatgtggccatgccgatgctatctttccaccacatatcaaaaatctcatatctcctctctctacc |
508 |
Q |
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| T |
44285106 |
aacatgcaaaagtgctcctagcattatgttcttctgatgtggccatgctgatgctatctttccaccacatatcaaaaatctcatatctcctctctctacc |
44285205 |
T |
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| Q |
509 |
atgttgtatgtaacggccct |
528 |
Q |
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| T |
44285206 |
atgttgtatgtaacggccct |
44285225 |
T |
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Back To:
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Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 468 - 521
Target Start/End: Original strand, 39397490 - 39397543
Alignment:
| Q |
468 |
ttccaccacatatcaaaaatctcatatctcctctctctaccatgttgtatgtaa |
521 |
Q |
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||||||||| |||||||||||||||| || ||| |||||||||||| ||||||| |
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| T |
39397490 |
ttccaccacctatcaaaaatctcataccttctcgctctaccatgttctatgtaa |
39397543 |
T |
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