View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18598_low_13 (Length: 482)

Name: NF18598_low_13
Description: NF18598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18598_low_13
NF18598_low_13
[»] chr2 (1 HSPs)
chr2 (13-461)||(42979349-42979799)
[»] chr6 (3 HSPs)
chr6 (119-172)||(285324-285377)
chr6 (110-171)||(16509355-16509416)
chr6 (110-190)||(13583774-13583855)
[»] chr3 (2 HSPs)
chr3 (116-187)||(38272700-38272773)
chr3 (114-170)||(54996792-54996848)
[»] chr8 (2 HSPs)
chr8 (118-184)||(18541148-18541214)
chr8 (114-187)||(21536981-21537054)
[»] chr7 (1 HSPs)
chr7 (118-172)||(21044923-21044977)
[»] chr5 (1 HSPs)
chr5 (111-144)||(27110130-27110163)
[»] chr1 (1 HSPs)
chr1 (114-166)||(25454831-25454883)


Alignment Details
Target: chr2 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 13 - 461
Target Start/End: Original strand, 42979349 - 42979799
Alignment:
Q  13 aatattttagggttatgtttgagagttttggaggatgttggaggaaaagattttaaaagacagagt--atatacatttaacattttttatttnnnnnnnc 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||| |||||||||||||||||       |    
T  42979349 aatattttagggttatgtttgagagttttggaggatgttggaggaaaagattttaaaaaacagagtctatatacgtttaacattttttatttaaaaaaac 42979448  T
Q  111 ataataaatgatcatataatattttaaccacactcgattcatttttaaaaacattttatagcaactttaatttaaaatataaaagcaagtgttctcaaaa 210  Q
    |||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  42979449 ataataaatgatcacataatattttaatcacacttgattcatttttaaaaacattttatagcaactttaatttaaaatataaaagcaagtcttctcaaaa 42979548  T
Q  211 tcctttcattcaaacatagaaaactaatcctcccactgtctagatctagaatattattaacaaaatcaaactgaaatggtgtgatcaactaaattaggag 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  42979549 tcctttcattcaaacatagaaaactaatcctcccactgtctagatctagaatattattaacaaaatcaaactgaaatggtgtgatcagctaaattaggag 42979648  T
Q  311 ttaattgggactttatttattaaattaagcgatgatatatatattctttcaattgaaattcattctcccttggttataaacccaggttcaccatgaaatt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42979649 ttaattgggactttatttattaaattaagcgatgatatatatattctttcaattgaaattcattctcccttggttataaacccaggttcaccatgaaatt 42979748  T
Q  411 tgcatcaacagtcctatttgttgcaggcaaccaaattaagaacaaccacca 461  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  42979749 tgcatcaacagtcctatttgttgcaggcaaccaaattaagcacaaccacca 42979799  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 119 - 172
Target Start/End: Complemental strand, 285377 - 285324
Alignment:
Q  119 tgatcatataatattttaaccacactcgattcatttttaaaaacattttatagc 172  Q
    ||||||||||||||||||| | ||||  ||||||||||||||||||||||||||    
T  285377 tgatcatataatattttaatctcactttattcatttttaaaaacattttatagc 285324  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 110 - 171
Target Start/End: Complemental strand, 16509416 - 16509355
Alignment:
Q  110 cataataaatgatcatataatattttaaccacactcgattcatttttaaaaacattttatag 171  Q
    ||||||| |||||||||||||| || || |||||| |||| |||||||||||||||||||||    
T  16509416 cataatagatgatcatataatacttcaatcacacttgatttatttttaaaaacattttatag 16509355  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 190
Target Start/End: Complemental strand, 13583855 - 13583774
Alignment:
Q  110 cataataaatgatcatataatattttaaccacactcgattcatttt-taaaaacattttatagcaactttaatttaaaatat 190  Q
    ||||||||||||||||||||||||| || ||||||  ||| |||||  |||||||| |||||  | || |||||||||||||    
T  13583855 cataataaatgatcatataatatttcaatcacacttaatttattttagaaaaacatgttatataatctgtaatttaaaatat 13583774  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 187
Target Start/End: Complemental strand, 38272773 - 38272700
Alignment:
Q  116 aaatgatcatataatattttaaccacactcg--attcatttttaaaaacattttatagcaactttaatttaaaa 187  Q
    ||||||||||||||||||| || ||||| ||  ||||||||||| ||||||||||||||  | |||||||||||    
T  38272773 aaatgatcatataatatttcaatcacacacgtaattcatttttagaaacattttatagcttccttaatttaaaa 38272700  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 54996792 - 54996848
Alignment:
Q  114 ataaatgatcatataatattttaaccacactcgattcatttttaaaaacattttata 170  Q
    |||||||||||||||||| || || ||||||  ||||||||| | ||||||||||||    
T  54996792 ataaatgatcatataatacttcaatcacacttcattcattttaataaacattttata 54996848  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 18541214 - 18541148
Alignment:
Q  118 atgatcatataatattttaaccacactcgattcatttttaaaaacattttatagcaactttaattta 184  Q
    |||||||||||| ||||||| || |||  || ||||||||| |||||||||||||  ||||||||||    
T  18541214 atgatcatataacattttaatcaaacttaatgcatttttaataacattttatagcttctttaattta 18541148  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 187
Target Start/End: Original strand, 21536981 - 21537054
Alignment:
Q  114 ataaatgatcatataatattttaaccacactcgattcatttttaaaaacattttatagcaactttaatttaaaa 187  Q
    |||||||||||||||||| || || ||||||| ||||||||  ||||| |||||| || | | |||||||||||    
T  21536981 ataaatgatcatataatacttcaatcacactcaattcatttaaaaaaatattttagagtacccttaatttaaaa 21537054  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 21044923 - 21044977
Alignment:
Q  118 atgatcatataatattttaaccacactcgattcatttttaaaaacattttatagc 172  Q
    |||||||||||| ||||||| ||||||  ||| ||||||||||||| ||||||||    
T  21044923 atgatcatataacattttaatcacacttaatttatttttaaaaacaatttatagc 21044977  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 144
Target Start/End: Complemental strand, 27110163 - 27110130
Alignment:
Q  111 ataataaatgatcatataatattttaaccacact 144  Q
    ||||||||||||||||||||||||||| ||||||    
T  27110163 ataataaatgatcatataatattttaatcacact 27110130  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 25454883 - 25454831
Alignment:
Q  114 ataaatgatcatataatattttaaccacactcgattcatttttaaaaacattt 166  Q
    |||||||||||||||||| || || || |||  ||||||||||||||||||||    
T  25454883 ataaatgatcatataataattaaatcagacttaattcatttttaaaaacattt 25454831  T

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