View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18598_low_14 (Length: 468)
Name: NF18598_low_14
Description: NF18598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18598_low_14 |
 | |
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| [»] chr5 (2 HSPs) |
| |
|
| [»] scaffold0002 (1 HSPs) |
| | |
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| [»] scaffold0140 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 18143979 - 18144305
Alignment:
| Q |
1 |
gtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaacccacggaccatattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18143979 |
gtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaacccacggaccatattc |
18144078 |
T |
|
| Q |
101 |
ttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcggatttctaacaact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18144079 |
ttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcggatttctaacaact |
18144178 |
T |
|
| Q |
201 |
agaatggttgaaattaataagatagcaattaaaacccaagaggtaataagcacttgagtatgcacttaaaagtcacctatttgccaatggaaatgtttcc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||| ||| || ||||||||||||| |||||||| | |
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|
| T |
18144179 |
agaatggttgaaattaataagatagcaattacaacccaagaggtaataagtacttgagcatgcacttgaaaatcccctatttgccaatagaaatgttgac |
18144278 |
T |
|
| Q |
301 |
ctacttccacaacagatatatcataga |
327 |
Q |
| |
|
||||||| ||| ||||||||||||||| |
|
|
| T |
18144279 |
ctacttcgacagcagatatatcataga |
18144305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 332 - 408
Target Start/End: Complemental strand, 18337372 - 18337293
Alignment:
| Q |
332 |
aaactacactcgtaacccaagttagtttgcgagattttttaaaaccatcggt---atacacgcgaaatacgtgcaagatc |
408 |
Q |
| |
|
||||||||| |||||||||||| |||| ||||| ||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
18337372 |
aaactacacccgtaacccaagtcagttcgcgaggttttttaaaaccaccggtgagatacacgcgaaatacgtgcaagatc |
18337293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 159 - 468
Target Start/End: Original strand, 34676485 - 34676796
Alignment:
| Q |
159 |
ttctgaccggacgttggaatagtttgcggatttctaacaactagaatggttgaaattaataagatagcaattaaaacccaagaggtaataagcacttgag |
258 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
34676485 |
ttctgaccggacat-ggaatagtttgcggatttctaacaattagaatggttgaaattaataagatagcaattacaacccaagaggtaataagcacttgag |
34676583 |
T |
|
| Q |
259 |
tatgcacttaaaagtcacctatttgccaatggaaatgtttccctacttccacaacagatatatcatagaatctaaactacactcgtaacccaagttagtt |
358 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
34676584 |
tatgcacttaaaactcacctatttgccaatgaaaatgtttccctacttccacaacagatatatcatagaatctaaactacactcgttacccaagttagtt |
34676683 |
T |
|
| Q |
359 |
tgcgagattttttaaaaccatcggt---atacacgcgaaatacgtgcaagatcctttagaatttagatgctaataccagtttaccttagtctatcctgga |
455 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34676684 |
tgcgagattttttaaaaccatcggtgagatacacgcgaaatacgtgcaagatcctttagaatttagatgctaataccagtttaccttagtctatcctgga |
34676783 |
T |
|
| Q |
456 |
tgaatctgattgt |
468 |
Q |
| |
|
||||||||||||| |
|
|
| T |
34676784 |
tgaatctgattgt |
34676796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 22966007 - 22965856
Alignment:
| Q |
1 |
gtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaacccacggaccatattc |
100 |
Q |
| |
|
|||||||||||||||| ||||||||| | | |||||||||||||||||||||||||| ||||||| |||||||| | || |||| ||||||||| |
|
|
| T |
22966007 |
gtaactttataattttt-aaggcaaaataatctttgaccaattcgaaacaaaaataaataaaaacaaagctccaataattgaaatccacataccatattc |
22965909 |
T |
|
| Q |
101 |
ttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaa |
153 |
Q |
| |
|
||||| ||| |||||||| || || | ||| |||||||||||||||||||||| |
|
|
| T |
22965908 |
ttctctaatttgagtttttcttacttatcgaatgaattcaaggacatattcaa |
22965856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 48185295 - 48185621
Alignment:
| Q |
1 |
gtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaacccacggaccatattc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
48185295 |
gtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaatagaaacaaagttccaataaacggaacccgcagaccatattc |
48185394 |
T |
|
| Q |
101 |
ttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcggatttctaacaact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
48185395 |
ttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctaaccagacgttggaatagtttgcggatttctaacaact |
48185494 |
T |
|
| Q |
201 |
agaatggttgaaattaataagatagcaattaaaacccaagaggtaataagcacttgagtatgcacttaaaagtcacctatttgccaatggaaatgtttcc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||| |||||||| ||| || ||||||||||||| |||||||| | |
|
|
| T |
48185495 |
agaatggttgaaattaataagatagcaattacaacccaagacgtaataagtacttgagcatgcacttgaaaatcccctatttgccaatagaaatgttgac |
48185594 |
T |
|
| Q |
301 |
ctacttccacaacagatatatcataga |
327 |
Q |
| |
|
||||||| ||| ||||||||||||||| |
|
|
| T |
48185595 |
ctacttcgacagcagatatatcataga |
48185621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 143 - 229
Target Start/End: Original strand, 26842690 - 26842776
Alignment:
| Q |
143 |
gacatattcaaagaaattctgaccggacgttggaatagtttgcggatttctaacaactagaatggttgaaattaataagatagcaat |
229 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
26842690 |
gacatattcaaagaaattctgaccaattattggaatagtttgtggatttctaacaattagaatgattgaaattaataagatagcaat |
26842776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 9293789 - 9294013
Alignment:
| Q |
1 |
gtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaacccacggaccatattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9293789 |
gtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaacccacggaccatattc |
9293888 |
T |
|
| Q |
101 |
ttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcggatttctaacaact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9293889 |
ttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcggatttctaacaact |
9293988 |
T |
|
| Q |
201 |
agaatggttgaaattaataagatag |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
9293989 |
agaatggttgaaattaataagatag |
9294013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 243 - 327
Target Start/End: Original strand, 9292295 - 9292379
Alignment:
| Q |
243 |
gtaataagcacttgagtatgcacttaaaagtcacctatttgccaatggaaatgtttccctacttccacaacagatatatcataga |
327 |
Q |
| |
|
|||||||| ||||||| |||||||| ||| || ||||||||||||| |||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
9292295 |
gtaataagtacttgagcatgcacttgaaaatcccctatttgccaatagaaatgttgacctacttcgacaacagatatatcataga |
9292379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 24489246 - 24489470
Alignment:
| Q |
1 |
gtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaacccacggaccatattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24489246 |
gtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaacccacggaccatattc |
24489345 |
T |
|
| Q |
101 |
ttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcggatttctaacaact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24489346 |
ttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcggatttctaacaact |
24489445 |
T |
|
| Q |
201 |
agaatggttgaaattaataagatag |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
24489446 |
agaatggttgaaattaataagatag |
24489470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 231408 - 231246
Alignment:
| Q |
1 |
gtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaacccacggaccatattc |
100 |
Q |
| |
|
|||||| ||||||||||||||| |||||||| || |||||||| |||||||||||||| ||||||| |||||||||||| |||||||| ||||||||||| |
|
|
| T |
231408 |
gtaactctataattttccaaggtaaaagagcacccgaccaatttgaaacaaaaataaaaaggaacatagttccaataaagggaacccagggaccatattc |
231309 |
T |
|
| Q |
101 |
ttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctg |
163 |
Q |
| |
|
||||||||||||||||||||||| |||||| || || ||||||||||||||||| |||||||| |
|
|
| T |
231308 |
ttctccaatctgagttttgctcaagtctcgaataaactcaaggacatattcaaaaaaattctg |
231246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 25384 - 25503
Alignment:
| Q |
1 |
gtaactttataattttccaaggcaaaagagcccctgaccaatt-----------cgaaacaaaaataaataggaacaaagttccaataaacggaacccac |
89 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25384 |
gtaactttataattttccaaggcaaaagaacccctgaccaattcgaaacaaattcgaaacaaaaataaataggaacaaagttccaataaacggaacccaa |
25483 |
T |
|
| Q |
90 |
ggaccatattcttctccaat |
109 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
25484 |
ggaccatattcttctccaat |
25503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 2 - 118
Target Start/End: Original strand, 8868205 - 8868319
Alignment:
| Q |
2 |
taactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaacccacggaccatattct |
101 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||||| ||| ||||| ||| | || | ||||||||||| ||||||||| ||||||||||| |
|
|
| T |
8868205 |
taactttataattttccaagacaaaagagcccctgacaaattccaaaaaaaaaaaaaaa--aaaagggttccaataaatggaacccactgaccatattct |
8868302 |
T |
|
| Q |
102 |
tctccaatctgagtttt |
118 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
8868303 |
tctccaatctgattttt |
8868319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 25719928 - 25719975
Alignment:
| Q |
78 |
aacggaacccacggaccatattcttctccaatctgagttttgctcacg |
125 |
Q |
| |
|
||||||||||| |||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
25719928 |
aacggaacccaaggacaatattcttccccaatctgagttttgctcacg |
25719975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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