View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18598_low_16 (Length: 461)

Name: NF18598_low_16
Description: NF18598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18598_low_16
NF18598_low_16
[»] scaffold0041 (3 HSPs)
scaffold0041 (1-438)||(87370-87807)
scaffold0041 (55-435)||(95440-95820)
scaffold0041 (1-43)||(95400-95442)
[»] chr7 (3 HSPs)
chr7 (1-438)||(40878476-40878913)
chr7 (55-435)||(40870462-40870842)
chr7 (1-43)||(40870840-40870882)
[»] chr2 (1 HSPs)
chr2 (345-434)||(40352688-40352777)
[»] chr1 (2 HSPs)
chr1 (361-438)||(28346744-28346821)
chr1 (346-416)||(42730140-42730210)
[»] chr4 (1 HSPs)
chr4 (345-399)||(21715642-21715696)


Alignment Details
Target: scaffold0041 (Bit Score: 398; Significance: 0; HSPs: 3)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Original strand, 87370 - 87807
Alignment:
Q  1 atggagtcaaagaagaaatttaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgccagaagttaact 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  87370 atggagtcaaagaagaaattgaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgccagaagttaact 87469  T
Q  101 cacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcattccatgtagagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  87470 cacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcattccatgtagagt 87569  T
Q  201 tgaagctataagatatatggctaatcatgagacggatgaagtctatgcaaaactcaggcttgttcctatgaatattaacgaggttagttttgataatgac 300  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||     
T  87570 tgaagctataagatatatggctaatcatgagaccgatgaagtgtatgcaaaactcagacttgtccctatgaatattaaccaggttagttttgataatgat 87669  T
Q  301 ggtgttgctggcaccaacgtgtctgaaactaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttctt 400  Q
    ||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  87670 ggtgttgctggcatcaacgtgtccgaaacaaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttctt 87769  T
Q  401 gtcctagatattgtgcagaaacgctttttcctcgtttg 438  Q
    ||||||||||||||||||||||||||||||||||||||    
T  87770 gtcctagatattgtgcagaaacgctttttcctcgtttg 87807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 55 - 435
Target Start/End: Original strand, 95440 - 95820
Alignment:
Q  55 tggcatgccgttgcaggaggaatggttcaaatgccagaagttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtga 154  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  95440 tggcatgccattgcaggaggaatggtgcaaatgccagaagttaactcacaggtcttttacttccctcagggtcacgccgagcatgcttgtgagccggtga 95539  T
Q  155 atttcagttcttactccaaaattccgtctttcattccatgtagagttgaagctataagatatatggctaatcatgagacggatgaagtctatgcaaaact 254  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||    
T  95540 atttcagtgcttactccaaaattccatctttcattccatgtagagttgaagatataagatatatggctaatcatgagaccgatgaagtgtatgcaaaact 95639  T
Q  255 caggcttgttcctatgaatattaacgaggttagttttgataatgacggtgttgctggcaccaacgtgtctgaaactaaggataaacatcaatcttttgcg 354  Q
    ||| ||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||    
T  95640 cagacttgtccctatgaatattaaccaggttagttttgataatgatggtgttgctggcatcaacgtgtccgaaacaaaggataaacatcaatcttttgcg 95739  T
Q  355 aaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaacgctttttcctcgt 435  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  95740 aaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaatgatttttcctcgt 95820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 95400 - 95442
Alignment:
Q  1 atggagtcaaagaagaaatttaaaaatgtgaacaagagtgtgg 43  Q
    ||||||||||| |||||||| ||||||||||||||||||||||    
T  95400 atggagtcaaaaaagaaattgaaaaatgtgaacaagagtgtgg 95442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 398; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Complemental strand, 40878913 - 40878476
Alignment:
Q  1 atggagtcaaagaagaaatttaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgccagaagttaact 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40878913 atggagtcaaagaagaaattgaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgccagaagttaact 40878814  T
Q  101 cacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcattccatgtagagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40878813 cacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcattccatgtagagt 40878714  T
Q  201 tgaagctataagatatatggctaatcatgagacggatgaagtctatgcaaaactcaggcttgttcctatgaatattaacgaggttagttttgataatgac 300  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||     
T  40878713 tgaagctataagatatatggctaatcatgagaccgatgaagtgtatgcaaaactcagacttgtccctatgaatattaaccaggttagttttgataatgat 40878614  T
Q  301 ggtgttgctggcaccaacgtgtctgaaactaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttctt 400  Q
    ||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40878613 ggtgttgctggcatcaacgtgtccgaaacaaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttctt 40878514  T
Q  401 gtcctagatattgtgcagaaacgctttttcctcgtttg 438  Q
    ||||||||||||||||||||||||||||||||||||||    
T  40878513 gtcctagatattgtgcagaaacgctttttcctcgtttg 40878476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 55 - 435
Target Start/End: Complemental strand, 40870842 - 40870462
Alignment:
Q  55 tggcatgccgttgcaggaggaatggttcaaatgccagaagttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtga 154  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  40870842 tggcatgccattgcaggaggaatggtgcaaatgccagaagttaactcacaggtcttttacttccctcagggtcacgccgagcatgcttgtgagccggtga 40870743  T
Q  155 atttcagttcttactccaaaattccgtctttcattccatgtagagttgaagctataagatatatggctaatcatgagacggatgaagtctatgcaaaact 254  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||    
T  40870742 atttcagtgcttactccaaaattccatctttcattccatgtagagttgaagatataagatatatggctaatcatgagaccgatgaagtgtatgcaaaact 40870643  T
Q  255 caggcttgttcctatgaatattaacgaggttagttttgataatgacggtgttgctggcaccaacgtgtctgaaactaaggataaacatcaatcttttgcg 354  Q
    ||| ||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||    
T  40870642 cagacttgtccctatgaatattaaccaggttagttttgataatgatggtgttgctggcatcaacgtgtccgaaacaaaggataaacatcaatcttttgcg 40870543  T
Q  355 aaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaacgctttttcctcgt 435  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  40870542 aaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaatgatttttcctcgt 40870462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 40870882 - 40870840
Alignment:
Q  1 atggagtcaaagaagaaatttaaaaatgtgaacaagagtgtgg 43  Q
    ||||||||||| |||||||| ||||||||||||||||||||||    
T  40870882 atggagtcaaaaaagaaattgaaaaatgtgaacaagagtgtgg 40870840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 345 - 434
Target Start/End: Complemental strand, 40352777 - 40352688
Alignment:
Q  345 atcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaacgctttttcctcg 434  Q
    ||||||||| || || |||||||| |||||||||||||||||||| || || |||  ||||||||| ||||| |||||| ||||||||||    
T  40352777 atcttttgcaaagactttgacacagtctgatgcaaacaatggtggagggttctctgttcctagatactgtgctgaaacgatttttcctcg 40352688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 361 - 438
Target Start/End: Original strand, 28346744 - 28346821
Alignment:
Q  361 ttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaacgctttttcctcgtttg 438  Q
    ||||| ||||||||||| ||||||||||| || ||||||  |||||| |||||||| || ||| |||| |||||||||    
T  28346744 ttgactcaatctgatgctaacaatggtggaggtttttctgttcctaggtattgtgccgagacgattttccctcgtttg 28346821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 416
Target Start/End: Original strand, 42730140 - 42730210
Alignment:
Q  346 tcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgc 416  Q
    |||||||| || || || |||||||||||||||||||| ||||| || ||||||  ||||||||| |||||    
T  42730140 tcttttgcaaagacattaacacaatctgatgcaaacaacggtggaggtttttctgttcctagatactgtgc 42730210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 399
Target Start/End: Original strand, 21715642 - 21715696
Alignment:
Q  345 atcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttct 399  Q
    ||||||||| || || ||||| ||||||||||||||||||||||| || ||||||    
T  21715642 atcttttgctaagactttgactcaatctgatgcaaacaatggtggggggttttct 21715696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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