View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18598_low_17 (Length: 455)
Name: NF18598_low_17
Description: NF18598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18598_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 208 - 440
Target Start/End: Original strand, 47592044 - 47592276
Alignment:
| Q |
208 |
tttatccatggtttctgatgcttcttctggacctcctcagtactatcatgtagaggaaaattaccaacaaccttattgtgtaaattggcattcttcaact |
307 |
Q |
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| T |
47592044 |
tttatccatggtttctgatgcttcttctggacctccacagtactatcatgtagaggaaaattaccaacaaccttattgtgtaaattggcattcttcaact |
47592143 |
T |
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| Q |
308 |
tccaaagaatccaaaaagaagggtaaagaatatggtaggaaaagtcaacagtcttcacctcttgatgatactgctagttcccctgttcttaactatccca |
407 |
Q |
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| T |
47592144 |
tccaaagaatccaaaaagaagggtaaagaatatggtaggaaaagtcaacagtcttcacctcttgatgatactgctagttcccctgttcttaactatccca |
47592243 |
T |
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| Q |
408 |
aggtaactcacaaagctaatttaatctcttatt |
440 |
Q |
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| T |
47592244 |
aggtaactcacaaagctaatttaatctcttatt |
47592276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 5 - 133
Target Start/End: Original strand, 47591835 - 47591963
Alignment:
| Q |
5 |
tctcgaagaatatttagacaagtgttagttaaaatggatatgtcaaattattcaaaatacaatagtgaaagtgaatctggttggactaattacttgaacc |
104 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47591835 |
tctcaaagaaaatttagacaagtgttagttaaaatggatatgtcaaattattcaaaatacaatagtgaaagtgaatctggttggactaattacttgaacc |
47591934 |
T |
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| Q |
105 |
attcatctttttctgaagaacatttcaat |
133 |
Q |
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| T |
47591935 |
attcatctttttctgaagaacatttcaat |
47591963 |
T |
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