View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18598_low_19 (Length: 437)
Name: NF18598_low_19
Description: NF18598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18598_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 111; Significance: 7e-56; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 9 - 167
Target Start/End: Complemental strand, 29296023 - 29295866
Alignment:
| Q |
9 |
aatatgcttgaaaatgttacctcttccaccttcttgaacaattttggcacctaaactcaacttacccctcaaagtctcagaaaatttaggacctaatttc |
108 |
Q |
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| T |
29296023 |
aatatgcttgaaaatgttacctcttccaccttcttgaataattttggcacctaaacttaacttacccttcaaagtctcagaaaatttaggacctaatttc |
29295924 |
T |
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| Q |
109 |
actgcaatcataacacaaccacactgtgagcaacgctataaaataaaggtctgcaaccg |
167 |
Q |
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| T |
29295923 |
actgcaatcataagacaa-cacattgtgagcaaggttttataataaaggtccgcaaccg |
29295866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 116
Target Start/End: Original strand, 42395500 - 42395607
Alignment:
| Q |
9 |
aatatgcttgaaaatgttacctcttccaccttcttgaacaattttggcacctaaactcaacttacccctcaaagtctcagaaaatttaggacctaatttc |
108 |
Q |
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||||| |||||||||||| ||||| ||||||||||| | || | ||||| ||||||||||||||| ||| |||||| || | ||||||||||| ||| |
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| T |
42395500 |
aatattcttgaaaatgttccctctcccaccttcttgtattatccttgcacccaaactcaacttacccttcagagtctctgatagtttaggacctagtttt |
42395599 |
T |
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| Q |
109 |
actgcaat |
116 |
Q |
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| T |
42395600 |
actgcaat |
42395607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 254
Target Start/End: Complemental strand, 29013063 - 29013018
Alignment:
| Q |
209 |
aacccgtaataatttgagaaaataaaataattgggtgtaactacat |
254 |
Q |
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| T |
29013063 |
aaccagtaatagtttgagaaaataaaataattgagtgtaacgacat |
29013018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 41508543 - 41508583
Alignment:
| Q |
214 |
gtaataatttgagaaaataaaataattgggtgtaactacat |
254 |
Q |
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| T |
41508543 |
gtaataatttgagaaaatagaataattgaatgtaactacat |
41508583 |
T |
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