View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18598_low_2 (Length: 866)
Name: NF18598_low_2
Description: NF18598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18598_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-138; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 525 - 846
Target Start/End: Original strand, 40192887 - 40193207
Alignment:
| Q |
525 |
atgttatagctcacaaccaaagctattacacattctcaccccctccacaactctccaccggcgaccaccgtcgttgtcctccgatctagtttctctgcaa |
624 |
Q |
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| T |
40192887 |
atgtcatagctcacaaccacagctattacacattctcatccc-tccacaactctccaccagcgaccgccgtcgctgtcctccgatctaatttctctgcaa |
40192985 |
T |
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| Q |
625 |
aaacgaacctaaacaaaacagatttcaaacaacataaatacaacaacgcagcggccggagagaggcgacggtcggtgagaggacgatgaaggtcgtggtc |
724 |
Q |
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| T |
40192986 |
aaacgaacctaaacaaaacagatatgaaacaacataaatacaacaacgccgcagccggagagaggcgacggccggtgagaggacgatgaaggtcctggtc |
40193085 |
T |
|
| Q |
725 |
ggcgtgagggagaagaggaggtcgcgatggattgagcaagatctggaagatggtggtgatgaggacggtgatggtggtgtttccacctcttcgtcggagt |
824 |
Q |
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| T |
40193086 |
ggcatgagggagaagaggaggtcgcgatggattgagcaagatttggaagatggtggtgatgaggacggtgatggtggtgtttccacctcttcgccggagt |
40193185 |
T |
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| Q |
825 |
tctctcttgtctggtcactctc |
846 |
Q |
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| T |
40193186 |
tctctcttgtctggtcactctc |
40193207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 389 - 453
Target Start/End: Original strand, 40192748 - 40192812
Alignment:
| Q |
389 |
atcagcaatgataacaggacacagaaaaattaacacaatacggacaccatatgtctatacgggta |
453 |
Q |
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| T |
40192748 |
atcaacaatgataacaggacacagaaaaactaacacaatacggacaccgtatgtctatacgggta |
40192812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 166; Significance: 2e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 3 - 235
Target Start/End: Complemental strand, 48155868 - 48155646
Alignment:
| Q |
3 |
actaaaagttgaagaaagtttttggaagaactgaaacgaaatgaaacgaaatgtccttatatttatacggatccaaaatatatttaacctttgaataaat |
102 |
Q |
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| T |
48155868 |
actaaaagttgaagaaagtttttggaagaactgaaacgaaatg----------tccttatatttatacggatccaaaatatatttaacttttgaataaat |
48155779 |
T |
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| Q |
103 |
gaaaatgatgtattcaacttaaaatccctgaagttctttaagaatatctaaaaagtttaaaaaacgtttattttgcattttttccatccttcgtaactgg |
202 |
Q |
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| T |
48155778 |
gaaaatgatgtattcaacttaaaatacctgcagttttttaagaatatctaaaaagtttaaaaaacgtttattttgcatttttgccatccttcgtaactgg |
48155679 |
T |
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| Q |
203 |
tatccgaggtattttaagcatcaatgaattgaa |
235 |
Q |
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| T |
48155678 |
tgtctgaggtattttaagcatcaacgaattgaa |
48155646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 314 - 384
Target Start/End: Complemental strand, 48155629 - 48155559
Alignment:
| Q |
314 |
ttgagagaaacgaattgaatcatatactcgactttgatgtactcaacgtttatttatgctttatatagtta |
384 |
Q |
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| T |
48155629 |
ttgagagaaacgaattgaatcatatactcgactttgatgtactcaacatttatttatgctttatatagtta |
48155559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 1e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 554 - 745
Target Start/End: Original strand, 8816279 - 8816468
Alignment:
| Q |
554 |
acattctcaccccctccacaactctccaccggcgaccaccgtcgttgtc--ctccgatctagtttctctgcaaaaacgaacctaaacaaaacagatttca |
651 |
Q |
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| T |
8816279 |
acattctcacccc-tccacaactctccaccggcgaccaccgtcgttctcctctccgatcgattttgtctgcaaaaacgaatccaaac---atagatctga |
8816374 |
T |
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| Q |
652 |
aacaacataaatacaacaacgcagcggccg-gagagaggcgacggtcggtgagaggacgatgaaggtcgtggtcggcgtgagggagaagaggagg |
745 |
Q |
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| T |
8816375 |
aacaacataagcacaacaaggcagcggccgagagagaggcgacgaccggtgagaggacgatgaagg-cgtggtcggcatgagggagaagaggagg |
8816468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 709 - 756
Target Start/End: Original strand, 35237369 - 35237416
Alignment:
| Q |
709 |
gatgaaggtcgtggtcggcgtgagggagaagaggaggtcgcgatggat |
756 |
Q |
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| T |
35237369 |
gatgaaggtcgtggtcggcgtgagggaaaggaggaggtcacgatggat |
35237416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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