View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18598_low_20 (Length: 410)
Name: NF18598_low_20
Description: NF18598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18598_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 13 - 397
Target Start/End: Complemental strand, 53866767 - 53866381
Alignment:
| Q |
13 |
aaaatatacacaaggccacatttcatatcaaaagaaacacctgatcaggagcacgtttcaaatccggaattagatgatcagcaagtttgatatcatcatt |
112 |
Q |
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| T |
53866767 |
aaaatatacacaaggccacatttcatatcaaaagaaacacctgatcaggagcacgtttcaaatccggaattagatgatcagcaagtttgatatcatcatt |
53866668 |
T |
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| Q |
113 |
atatccaaaccttttaagcatagtccatggtatctcacgaaacaaaattttcatgaaatcagcatggagagattgaaatcctgtgaaagtaagtccacgt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53866667 |
atatccaaaccttttaagcatagtccatggtatctcacgaaacaaaattttcatgaaatcagcatggagagattgaaatcctgtgaaagtaagtccacgt |
53866568 |
T |
|
| Q |
213 |
tcattcataccttctgggaatctgtctcgcaaaaatctcattagatt--caattctagtttctggcaccggatctttgacatatttaacctgtaaatagt |
310 |
Q |
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| T |
53866567 |
tcattcataccttccgggaatctgtctcgcaaaaatctcattagattcgcaattctagtttctggcaccggatctttgacatatttaacctgtaaatagt |
53866468 |
T |
|
| Q |
311 |
tttgttagatgtttcaagttaacctacagtgaaataatcttataattaagctatataacattcagataataaatgagacacaatttt |
397 |
Q |
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| T |
53866467 |
tttgttagatgtttcaagttaacctacagtgaaataatcttataattaagctatataacattcagataataaatgagccacaatttt |
53866381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 51 - 226
Target Start/End: Original strand, 54160566 - 54160741
Alignment:
| Q |
51 |
acctgatcaggagcacgtttcaaatccggaattagatgatcagcaagtttgatatcatcattatatccaaaccttttaagcatagtccatggtatctcac |
150 |
Q |
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| T |
54160566 |
acctgatcgggagcacgtgtcagaggcggaattagatgatcagcaagtctgatatcatccatatacccaaactttcttagcatagcccacggtacctccc |
54160665 |
T |
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| Q |
151 |
gaaacaaaattttcatgaaatcagcatggagagattgaaatcctgtgaaagtaagtccacgttcattcataccttc |
226 |
Q |
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| | | |||||| |||||||||| || | |||||||||||||| |||||||||||| ||||||| | |||||| |
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| T |
54160666 |
ggtgccatattttcttgaaatcagcgtgtaaagattgaaatcctgctaaagtaagtccatgttcattgacaccttc |
54160741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 29 - 141
Target Start/End: Original strand, 17882600 - 17882712
Alignment:
| Q |
29 |
cacatttcatatcaaaagaaacacctgatcaggagcacgtttcaaatccggaattagatgatcagcaagtttgatatcatcattatatccaaacctttta |
128 |
Q |
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|||| ||||| |||||||||||||||||||||| |||||||||||| ||||||| || ||||||||| |||||||||||||||||||||||||| | |
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| T |
17882600 |
cacaattcatctcaaaagaaacacctgatcaggtgcacgtttcaaaggtggaattaaatcatcagcaagcttgatatcatcattatatccaaacctcctg |
17882699 |
T |
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| Q |
129 |
agcatagtccatg |
141 |
Q |
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|||| |||||||| |
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| T |
17882700 |
agcacagtccatg |
17882712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 24 - 122
Target Start/End: Original strand, 14775222 - 14775320
Alignment:
| Q |
24 |
aaggccacatttcatatcaaaagaaacacctgatcaggagcacgtttcaaatccggaattagatgatcagcaagtttgatatcatcattatatccaaac |
122 |
Q |
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|||| |||| ||||| | |||||||||||||||||||| |||||||||||| ||||| | || ||||||||| |||||||||||||||||||||||| |
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| T |
14775222 |
aaggtcacaattcatctgaaaagaaacacctgatcaggtgcacgtttcaaaggtggaatcaaattatcagcaagcttgatatcatcattatatccaaac |
14775320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 27 - 141
Target Start/End: Original strand, 15017292 - 15017406
Alignment:
| Q |
27 |
gccacatttcatatcaaaagaaacacctgatcaggagcacgtttcaaatccggaattagatgatcagcaagtttgatatcatcattatatccaaaccttt |
126 |
Q |
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|||||| || || |||||||||||||||||||||| ||| | |||||| ||||| || || | ||||||| |||| ||||| ||||||||||||| ||| |
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| T |
15017292 |
gccacaatttatctcaaaagaaacacctgatcaggtgcaagcttcaaaggcggaaataaatcagcagcaagcttgacatcataattatatccaaactttt |
15017391 |
T |
|
| Q |
127 |
taagcatagtccatg |
141 |
Q |
| |
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| |||| |||||||| |
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| T |
15017392 |
ttagcacagtccatg |
15017406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 122
Target Start/End: Original strand, 15050063 - 15050156
Alignment:
| Q |
27 |
gccacatttcatatcaaaagaaacacctgatcaggagcacgtttcaaatccggaattagatgatcagcaagtttgatatcatcattatatccaaac |
122 |
Q |
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| T |
15050063 |
gccacaatttatctcaaaagaaagacctgatcaggtgc--gtttcaaaggtggaaataaatcatcagaaagcttgatatcataattatatccaaac |
15050156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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