View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18598_low_22 (Length: 387)

Name: NF18598_low_22
Description: NF18598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18598_low_22
NF18598_low_22
[»] chr8 (16 HSPs)
chr8 (1-370)||(15047604-15047978)
chr8 (114-257)||(13033680-13033823)
chr8 (114-257)||(15052806-15052949)
chr8 (114-257)||(15067005-15067148)
chr8 (114-257)||(15214292-15214435)
chr8 (114-245)||(15029993-15030124)
chr8 (126-252)||(15751433-15751559)
chr8 (127-243)||(15000442-15000558)
chr8 (1-51)||(15067307-15067357)
chr8 (1-50)||(15030281-15030330)
chr8 (60-110)||(15053007-15053056)
chr8 (1-50)||(15053109-15053158)
chr8 (1-52)||(13033981-13034032)
chr8 (60-95)||(15067220-15067255)
chr8 (10-51)||(15214092-15214133)
chr8 (60-93)||(15214185-15214218)
[»] chr7 (2 HSPs)
chr7 (114-252)||(1626481-1626619)
chr7 (114-252)||(1617931-1618069)


Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 15047978 - 15047604
Alignment:
Q  1 gagtgaagggcaccctttaaatgataggcttgatccacttaatttttcttctgtcattgatcccctatttctccctttcgaaagaaaaactctctgttaa 100  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  15047978 gagtgaaggtcaccctttaaatgataggcttgatccacttaatttttcttctatcattgatcccctatttctccctttcgaaagaaaaactctctgttaa 15047879  T
Q  101 acatttactgctatgattatatttccaatcactccattattttcctcttcttgagtgaaaggatatcccacaaattctgcaattcttttgatgttaaaat 200  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||| |||||    
T  15047878 -catttactgctatgattatatttccaatcactccattattttcctcttcttgagtgaaaggaaatcccacaaattctgcaattcttttcgtgtgaaaat 15047780  T
Q  201 taacatcttctttaaggtcttcatatttcaagaataaaaccttatgtggtctttctaggttaaattcaacgtaaggaaccaattcaagggaattgaatgt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15047779 taacatcttctttaaggtcttcatatttcaagaataaaaccttatgtggtctttctaggttaaattcaacgtaaggaaccaattcaagggaattgaatgt 15047680  T
Q  301 aagtaatgaatggt------tattttcaaaggaagaaaaatgttgcctgttaacaatagcaaatgcaagggctttc 370  Q
    ||||||||||||||      |||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  15047679 aagtaatgaatggttattattattctcaaaggaggaaaaatgttgccggttaacaatagcaaatgcaagggctttc 15047604  T

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Target: chr8; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 114 - 257
Target Start/End: Complemental strand, 13033823 - 13033680
Alignment:
Q  114 tgattatatttccaatcactccattattttcctcttcttgagtgaaaggatatcccacaaattctgcaattcttttgatgttaaaattaacatcttcttt 213  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  13033823 tgattatattttcaaccactccattattttcctcttcttgagtgaaaggaaatcccacaaactctgcaattcttttgatgtgaaaattaacatcttcttt 13033724  T
Q  214 aaggtcttcatatttcaagaataaaaccttatgtggtctttcta 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  13033723 aaggtcttcatatttcaagaataaaaccttatgtggtctttcta 13033680  T

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Target: chr8; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 114 - 257
Target Start/End: Complemental strand, 15052949 - 15052806
Alignment:
Q  114 tgattatatttccaatcactccattattttcctcttcttgagtgaaaggatatcccacaaattctgcaattcttttgatgttaaaattaacatcttcttt 213  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  15052949 tgattatattttcaatcactccattattttcctcttcttgagtgaaaggaattccaacaaattctgcaattcttttgatgttaaaattaacatcttcttt 15052850  T
Q  214 aaggtcttcatatttcaagaataaaaccttatgtggtctttcta 257  Q
    |||||||||||||||||||||||||||| ||| |||||||||||    
T  15052849 aaggtcttcatatttcaagaataaaaccctatatggtctttcta 15052806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 114 - 257
Target Start/End: Complemental strand, 15067148 - 15067005
Alignment:
Q  114 tgattatatttccaatcactccattattttcctcttcttgagtgaaaggatatcccacaaattctgcaattcttttgatgttaaaattaacatcttcttt 213  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||  ||| ||||||||||||||||||    
T  15067148 tgattatattttcaatcactccattattttcctcttcttcagtgaaaggaaatcccacaaattctgcaattcttttcgtgtgaaaattaacatcttcttt 15067049  T
Q  214 aaggtcttcatatttcaagaataaaaccttatgtggtctttcta 257  Q
    |||||||||||||||||||||||||||| ||| |||||||||||    
T  15067048 aaggtcttcatatttcaagaataaaaccctatctggtctttcta 15067005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 114 - 257
Target Start/End: Original strand, 15214292 - 15214435
Alignment:
Q  114 tgattatatttccaatcactccattattttcctcttcttgagtgaaaggatatcccacaaattctgcaattcttttgatgttaaaattaacatcttcttt 213  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||  ||| ||||||||||||||||||    
T  15214292 tgattatattttcaatcactccattattttcctcttcttgagtgaaaggaattcccacaaattctgcaattcttttcgtgtgaaaattaacatcttcttt 15214391  T
Q  214 aaggtcttcatatttcaagaataaaaccttatgtggtctttcta 257  Q
    |||||||||||||||||||||||||||| ||| |||||||||||    
T  15214392 aaggtcttcatatttcaagaataaaaccctatctggtctttcta 15214435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 114 - 245
Target Start/End: Complemental strand, 15030124 - 15029993
Alignment:
Q  114 tgattatatttccaatcactccattattttcctcttcttgagtgaaaggatatcccacaaattctgcaattcttttgatgttaaaattaacatcttcttt 213  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  15030124 tgattatattttcaatcacttcattattttcctcttcttgagtgaaaggaaatcccacaaattctgcaattcttttgaggttaaaactaacatcttcttt 15030025  T
Q  214 aaggtcttcatatttcaagaataaaaccttat 245  Q
    ||||||||| |||||||||||||||| |||||    
T  15030024 aaggtcttcgtatttcaagaataaaatcttat 15029993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 126 - 252
Target Start/End: Complemental strand, 15751559 - 15751433
Alignment:
Q  126 caatcactccattattttcctcttcttgagtgaaaggatatcccacaaattctgcaattcttttgatgttaaaattaacatcttctttaaggtcttcata 225  Q
    ||||||| |||||| ||||||||||||||||||||||| |  |||  || ||||||||||||||||  | | ||||  ||| ||||||||| ||||||||    
T  15751559 caatcacaccattactttcctcttcttgagtgaaaggacaatccaagaactctgcaattcttttgacatgagaatttccattttctttaagatcttcata 15751460  T
Q  226 tttcaagaataaaaccttatgtggtct 252  Q
    ||||| |||||||||||| | ||||||    
T  15751459 tttcatgaataaaaccttgtctggtct 15751433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 127 - 243
Target Start/End: Complemental strand, 15000558 - 15000442
Alignment:
Q  127 aatcactccattattttcctcttcttgagtgaaaggatatcccacaaattctgcaattcttttgatgttaaaattaacatcttctttaaggtcttcatat 226  Q
    ||||| || |||| |||||||||||||||| |||||| | ||||  ||||||||||||||||| |  | | ||||  |||||| |||||| ||||||||     
T  15000558 aatcattctattactttcctcttcttgagtaaaaggacaacccaagaattctgcaattcttttcacttgataattggcatcttgtttaagttcttcatag 15000459  T
Q  227 ttcaagaataaaacctt 243  Q
    |||||||||||||||||    
T  15000458 ttcaagaataaaacctt 15000442  T

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Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 15067357 - 15067307
Alignment:
Q  1 gagtgaagggcaccctttaaatgataggcttgatccacttaatttttcttc 51  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  15067357 gagttaagggcaccccttaaatgataggcttgatccacttaatttttcttc 15067307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 15030330 - 15030281
Alignment:
Q  1 gagtgaagggcaccctttaaatgataggcttgatccacttaatttttctt 50  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  15030330 gagttaagggcaccctttaaatgataggcttaatccacttaatttttctt 15030281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 15053056 - 15053007
Alignment:
Q  60 atcccctatttctccctttcgaaagaaaaactctctgttaaacatttactg 110  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  15053056 atcccctatttctccctttcgaaagaaaaactctctg-tcaacatttactg 15053007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 15053158 - 15053109
Alignment:
Q  1 gagtgaagggcaccctttaaatgataggcttgatccacttaatttttctt 50  Q
    |||| |||||||||| ||||||||||||||||||||||| ||||||||||    
T  15053158 gagttaagggcaccccttaaatgataggcttgatccactgaatttttctt 15053109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 13034032 - 13033981
Alignment:
Q  1 gagtgaagggcaccctttaaatgataggcttgatccacttaatttttcttct 52  Q
    |||| ||||||  ||||||||||||||| |||||||||||||||||||||||    
T  13034032 gagttaagggccacctttaaatgataggtttgatccacttaatttttcttct 13033981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 60 - 95
Target Start/End: Complemental strand, 15067255 - 15067220
Alignment:
Q  60 atcccctatttctccctttcgaaagaaaaactctct 95  Q
    ||||||||||||||||||||||||||||||||||||    
T  15067255 atcccctatttctccctttcgaaagaaaaactctct 15067220  T

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Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 15214092 - 15214133
Alignment:
Q  10 gcaccctttaaatgataggcttgatccacttaatttttcttc 51  Q
    |||| ||||||||||||| ||||||||| |||||||||||||    
T  15214092 gcacactttaaatgatagacttgatccatttaatttttcttc 15214133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 93
Target Start/End: Original strand, 15214185 - 15214218
Alignment:
Q  60 atcccctatttctccctttcgaaagaaaaactct 93  Q
    ||||||||||||||||||||||||| ||||||||    
T  15214185 atcccctatttctccctttcgaaagtaaaactct 15214218  T

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Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 114 - 252
Target Start/End: Original strand, 1626481 - 1626619
Alignment:
Q  114 tgattatatttccaatcactccattattttcctcttcttgagtgaaaggatatcccacaaattctgcaattcttttgatgttaaaattaacatcttcttt 213  Q
    ||||||||||| ||||||| |||||| |||| || |||||||| |||||| | |||| ||| |||||||||||||| |  | |||||| | |||||||||    
T  1626481 tgattatattttcaatcacaccattactttcttcctcttgagtaaaaggacaacccaaaaactctgcaattcttttaacatgaaaatttatatcttcttt 1626580  T
Q  214 aaggtcttcatatttcaagaataaaaccttatgtggtct 252  Q
    ||| |||||||||||||||||||||| ||| | ||||||    
T  1626581 aagatcttcatatttcaagaataaaatcttgtttggtct 1626619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 114 - 252
Target Start/End: Original strand, 1617931 - 1618069
Alignment:
Q  114 tgattatatttccaatcactccattattttcctcttcttgagtgaaaggatatcccacaaattctgcaattcttttgatgttaaaattaacatcttcttt 213  Q
    |||| |||||| ||||||| |||||| ||||||| |||||||| |||||| | |||| ||| |||||||||||||| |  | |||||| | |||||||||    
T  1617931 tgataatattttcaatcacaccattactttcctcctcttgagtaaaaggacaacccaaaaactctgcaattcttttcacatgaaaatttatatcttcttt 1618030  T
Q  214 aaggtcttcatatttcaagaataaaaccttatgtggtct 252  Q
    ||| |||||||||| ||||||||||| ||| | ||||||    
T  1618031 aagatcttcatattgcaagaataaaatcttgtttggtct 1618069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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