View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18598_low_26 (Length: 362)
Name: NF18598_low_26
Description: NF18598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18598_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 11 - 346
Target Start/End: Original strand, 6512456 - 6512792
Alignment:
| Q |
11 |
cagagacaagagcttattttttctaaaaaagtaactaaccttaattcttcatgcaaatgattactaatgaattaggagctgccaccgccgccaaaaccac |
110 |
Q |
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| T |
6512456 |
cagagacaagagcttatttt-tctaaaaaagtaactaaccttaattcttcatgcaaatgattactaatgaattaggagctgccaccgccgccaaaaccac |
6512554 |
T |
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| Q |
111 |
cgtcattgccatcaacaccggtcggaatagccagtgcgcggtgaaatgggcggtggaccaccttctaaagaagaactctaattgcattctcattcatgtt |
210 |
Q |
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| T |
6512555 |
cgtcattgccatcaacaccggtcggaatagccagtgcgcggtgaaatgggcggtggaccaccttctaaagaagaactccaattgcattctcattcatgtt |
6512654 |
T |
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| Q |
211 |
cgtactaaacccctcaattccagtaggtattcttctccttatctcccattcatccttcccacatcaac--nnnnnnnnnntgaacctttcatcataaatt |
308 |
Q |
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| T |
6512655 |
cgtaccaaacctctcaattccagtaggtattcttctccttatctcccattcatccttctcacatcaacaaaaaaaataaatcaacctttcatcataaatt |
6512754 |
T |
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| Q |
309 |
ttaacaaaaccctgtttttgtcctttcacctagattat |
346 |
Q |
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| T |
6512755 |
ttaacaaaaccctgtttttgtcctttcacctagattat |
6512792 |
T |
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