View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18598_low_28 (Length: 355)
Name: NF18598_low_28
Description: NF18598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18598_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 21 - 344
Target Start/End: Complemental strand, 3454120 - 3453796
Alignment:
| Q |
21 |
accaggtatgtgttagtaacagcgttcctt-cttttgttttagaattgattatattttgaattcatatagtgaaatttgatttttgtttagcaagtgtac |
119 |
Q |
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| T |
3454120 |
accaggtatgtgttagtaacagcgttcttttcttttgttttagaattgattatattttgtattcatatagtgaaatttgatttttgtttagcaagtgtac |
3454021 |
T |
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| Q |
120 |
ttaannnnnnnctttctcatgttgtaatgtcacacagaaaaggctatacctactttatttagaaggtacatgcaagttagtgcagaccatgctcgaaaat |
219 |
Q |
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| T |
3454020 |
ttaatttttttctttttcatgttgtaatgtcacacagaaaaggctatacctactttatttagaaggtacatgcaagttagtgcagaccatgctcgaaaat |
3453921 |
T |
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| Q |
220 |
atggaggcacaggtctaggactagcaatatgtaaacaactggtaaactcttccgccaaagcattttcatttgacaaattattctgccttaatcttttgtt |
319 |
Q |
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| T |
3453920 |
atggaggcacaggtctaggactagcaatatgtaaacaactggtaaactcttccgccaaagcattttcatttgacaaattattctgccttaatcttttgtt |
3453821 |
T |
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| Q |
320 |
tcctttagttataaatttaattcat |
344 |
Q |
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| T |
3453820 |
tcctttagttataaatttaattcat |
3453796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 153 - 265
Target Start/End: Original strand, 48696644 - 48696756
Alignment:
| Q |
153 |
acagaaaaggctatacctactttatttagaaggtacatgcaagttagtgcagaccatgctcgaaaatatggaggcacaggtctaggactagcaatatgta |
252 |
Q |
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| T |
48696644 |
acagaaaatgcaatacatagtttattcaaaaggtacatgcaagtcagtgtagatcacgctcgaaagtatggtgggacagggctaggactagcaatatgca |
48696743 |
T |
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| Q |
253 |
aacaactggtaaa |
265 |
Q |
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| T |
48696744 |
aacaactggtaaa |
48696756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 267
Target Start/End: Complemental strand, 24626877 - 24626792
Alignment:
| Q |
182 |
aaggtacatgcaagttagtgcagaccatgctcgaaaatatggaggcacaggtctaggactagcaatatgtaaacaactggtaaact |
267 |
Q |
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|||||||||||||||| ||| ||| || |||| ||| | ||||| ||| ||||||||||||||||||| ||||||| ||||||| |
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| T |
24626877 |
aaggtacatgcaagttggtgtagatcacgctcaaaagtttggagagacaagtctaggactagcaatatgcaaacaaccagtaaact |
24626792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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