View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18598_low_29 (Length: 352)
Name: NF18598_low_29
Description: NF18598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18598_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 2223214 - 2223546
Alignment:
| Q |
1 |
gagggtaggaggaatcatggattggattggtgtgaagctatgtgttcttgttttatgaaaatggatagtgaaattggagtcggtggaagttgtggtgatg |
100 |
Q |
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| T |
2223214 |
gagggtaggaggaatcatggattggattggtgtgaagctatgtgttcttgttttatgaagatggatagtgaaattggagtcggtggaagttgtggtgatg |
2223313 |
T |
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| Q |
101 |
aggttgatgggaataccgtgggttcgacggcggctgtggtggtggtggggaaggaggagattgtagtggcgaattgtggtgactcaagggcggtgctttg |
200 |
Q |
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| T |
2223314 |
aggttgatgggaataccgtgggttcgacggcggctgtggtggtggtggggaaggaggagattgtagtggcgaattgtggtgactcaagggcggtgctttg |
2223413 |
T |
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| Q |
201 |
tagtggcggtgtagcggtgccactttcacgagatcataaggtgatggttaattaatggtgactcatgagatataaagaaacttacaattaagcaaactaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2223414 |
tagtggcggtgtagcggtgccactttcacgagatcataaggtgatggttaattaatggtgactcatgagatataaagaaacttacaattaagc-aactaa |
2223512 |
T |
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| Q |
301 |
acatgtacacttaattctcataaagaaaatatgt |
334 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
2223513 |
acatgtacacttaattctcataaagaaaatatgt |
2223546 |
T |
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