View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18598_low_3 (Length: 810)
Name: NF18598_low_3
Description: NF18598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18598_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 468; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 1 - 521
Target Start/End: Original strand, 34905834 - 34906354
Alignment:
| Q |
1 |
taataaagaatgcgcctttatctcccaaatgatagtcctcccatcttagctcctcatggcttttatctttggaaacaggcatggctgatattgactccaa |
100 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34905834 |
taataaagaatgcacctttatctcccaaatgatagtcctcccatcttagctcctcatggcttttatctttgtaaacaggcatggctgatattgactccaa |
34905933 |
T |
|
| Q |
101 |
ctttgccgtatgtccagaggcaccactatccgcttccactgtagccgagtaactagctattctacttccaccccgttgtcctccaaatcctgactgccca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34905934 |
ctttgccgtatgtccagaggcaccactatccgcttccactgtagccgagtaactagctattctacttccaccccgttgtcctccaaatcctgactgccca |
34906033 |
T |
|
| Q |
201 |
ataccagtacttccaaatgcttgagtgggagtctgtgatcctgcataagaaaatatgaaaaatcactctcaattacaatgacataagatacnnnnnnntg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
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| T |
34906034 |
ataccagtacttccaaatgcttgagtgggagtctgtgatcctgcataagaaaatatgaaaaatcactctcaattacaatgacataaaatacaaaaaaatg |
34906133 |
T |
|
| Q |
301 |
cataatcattcaagtcccttacatcttaaaaattgacattatcgtagagaagataaaattctaaaaactattgaactaatcaaatgcagaactctgacct |
400 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34906134 |
cataattattcaagtcccttacatcttaaaaattgacattatcgtagagaagataaaattctaaaaactattgaactaaccaaatgcagaactctgacct |
34906233 |
T |
|
| Q |
401 |
ccaaaagcagaggtcgtactcccaaatgggctgctggtgccaaatgcagaaagtgttccaaatgggtctgtaatggatgctgcttgtgcaaccatagaac |
500 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
34906234 |
ccaaaagcagaggtcgtactcccaaatgggctgttggtgccaaatgcagaaagtgttccaaatgggtctgtaatgggtgctgcttgtgcaaccatagaac |
34906333 |
T |
|
| Q |
501 |
ttcggggaatagccctgtcaa |
521 |
Q |
| |
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|| |||||||||||||||||| |
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|
| T |
34906334 |
tttggggaatagccctgtcaa |
34906354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 2 - 451
Target Start/End: Original strand, 34895326 - 34895776
Alignment:
| Q |
2 |
aataaagaatgcgcctttatctcccaaatgatagtcctcccatcttagctcctcatggcttttatctttggaaacaggcatggctgatattgactccaac |
101 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34895326 |
aataaagaatgcacctttatctcccaattgatagtcctcccatcttagctcctcgtggcttttatctttgtaaacaggcatggctgatattgactccaac |
34895425 |
T |
|
| Q |
102 |
tttgccgtatgtccagaggcaccactatccgcttccactgtagccgagtaactagctattctacttccaccccgttgtcctccaaatcctgactgcccaa |
201 |
Q |
| |
|
||||| || |||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
34895426 |
tttgcagtctgtccagaggtgccactatctgcttccactgtagctgagtaactagctattctacttccaccccgttgacctccaaatcctgactgcccaa |
34895525 |
T |
|
| Q |
202 |
taccagtacttccaaatgcttgagtgggagtctgtgatcctgcataagaaaatatg-aaaaatcactctcaattacaatgacataagatac-nnnnnnnt |
299 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| | |
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|
| T |
34895526 |
taccagtacttccaaatgcttgagttggagtctgtgatcctgcataagaaaatatgaaaaaatcactctcaattacaatgacatgtgatacaaaaaaaat |
34895625 |
T |
|
| Q |
300 |
gcataatcattcaagtcccttacatcttaaaaattgacattatcgtagagaagataaaattctaaaaactattgaactaatcaaatgcagaactctgacc |
399 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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|
| T |
34895626 |
acataattattcaagtcccttacatcttaaaaattgaca-tatcacagagaagataaaattctaaaaactattgaactcaccaaatgcagaactctgacc |
34895724 |
T |
|
| Q |
400 |
tccaaaagcagaggtcgtactcccaaatgggctgctggtgccaaatgcagaa |
451 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34895725 |
tacaaaagcagaggtcgtactcccaaatgggctgctggtgccaaatgcagaa |
34895776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 595 - 793
Target Start/End: Original strand, 34906428 - 34906623
Alignment:
| Q |
595 |
gtgacattctatttccaaaagaaaagagataaaatgatagtggtggcatgcatgggtatgatggtacgagaaaaagtcactgtcccttggtcacctcgaa |
694 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34906428 |
gtgacattctatttccaaaagaaaagagataaaatgacagtgg---catgcatgggtatgatggtacgagaaaaagtcactgtcccttggtcacctcgaa |
34906524 |
T |
|
| Q |
695 |
aagggtatgcagaaatataaactattgcatgaaaccaagaaataaaacaattgtaacttaccgaagtccaacattattctgaccaaacatgcctggagt |
793 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
34906525 |
aagggtatgcagaaatataaactagtgcatgaaaccaagaaataaaacaattgtaacttaccgaagtccaacattattctgaccaaacatgcccggagt |
34906623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 181 - 393
Target Start/End: Original strand, 34915640 - 34915854
Alignment:
| Q |
181 |
ctccaaatcctgactgcccaataccagtacttccaaatgcttgagtgggagtctgtgatcctgcataagaaaatatgaaaa-atcactctcaattacaat |
279 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||| | ||| ||||||||||||||||||| ||| |||||||||| |||||||||||||||||| |
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|
| T |
34915640 |
ctccaaatcccgactgcccaataccagtatttccaaaaaccggagcgggagtctgtgatcctgcacgagacaatatgaaaagatcactctcaattacaat |
34915739 |
T |
|
| Q |
280 |
gacataagatacnnnnnnn-tgcataatcattcaagtcccttacatcttaaaaattgacattatcgtagagaagataaaattctaaaaactattgaacta |
378 |
Q |
| |
|
|||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
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|
| T |
34915740 |
gacataagatacaaaaaaaatgcataattattcaagtcctttacatcttaaaaattgacattatcgtagagaagataaaattataaaaactattgaattc |
34915839 |
T |
|
| Q |
379 |
atcaaatgcagaact |
393 |
Q |
| |
|
| ||||||||||||| |
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|
| T |
34915840 |
accaaatgcagaact |
34915854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 15 - 288
Target Start/End: Original strand, 34909261 - 34909526
Alignment:
| Q |
15 |
cctttatctcccaaatgatagtcctcccatcttagctcctcatggcttttatctttggaaacaggcatggctgatattgactccaactttgccgtatgtc |
114 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||| || |
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|
| T |
34909261 |
cctttatctcccaattgatagtcttcccatcttagctcctcatggcttttatctttgtaaacaggcatgactgatattgactccaatttt--------tc |
34909352 |
T |
|
| Q |
115 |
cagaggcaccactatccgcttccactgtagccgagtaactagctattctacttccaccccgttgtcctccaaatcctgactgcccaataccagtacttcc |
214 |
Q |
| |
|
||| | |||| || ||||| |||||| ||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||| ||| | |||| |
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|
| T |
34909353 |
aagacg-tccacaatttgcttcagttgtagctgagtaactagctactctacttccacctcgttgtcctccaaatcccgactgcccaatatcagcatttcc |
34909451 |
T |
|
| Q |
215 |
aaatgcttgagtgggagtctgtgatcctgcataagaaaatatgaaaa-atcactctcaattacaatgacataaga |
288 |
Q |
| |
|
||| | ||| ||||| || ||||||||| ||| |||||||||| |||| |||||||||||||| ||||||| |
|
|
| T |
34909452 |
aaaacccggagcaggagtatgcgatcctgcacgagacaatatgaaaagatcagtctcaattacaatggcataaga |
34909526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 666 - 785
Target Start/End: Original strand, 34893684 - 34893803
Alignment:
| Q |
666 |
aaaagtcactgtcccttggtcacctcgaaaagggtatgcagaaatataaactattgcatgaaaccaagaaataaaacaattgtaacttaccgaagtccaa |
765 |
Q |
| |
|
||||||| ||||| ||||| ||| | |||| ||||| || ||| ||||||| ||||||| |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
34893684 |
aaaagtccctgtcatttggtaaccccaaaaaaggtatacaataatttaaactaatgcatgataccaagaaataaaacaattgtaacttactgaagtccaa |
34893783 |
T |
|
| Q |
766 |
cattattctgaccaaacatg |
785 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
34893784 |
cattattctgaccaaacatg |
34893803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 446 - 521
Target Start/End: Original strand, 34893499 - 34893574
Alignment:
| Q |
446 |
gcagaaagtgttccaaatgggtctgtaatggatgctgcttgtgcaaccatagaacttcggggaatagccctgtcaa |
521 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34893499 |
gcaggaagtgttccaaatgggtttgtaatgggtgctgcttgtgcaaccatagaactctggggaatagccctgtcaa |
34893574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 348 - 451
Target Start/End: Original strand, 34909598 - 34909701
Alignment:
| Q |
348 |
agaagataaaattctaaaaactattgaactaatcaaatgcagaactctgacctccaaaagcagaggtcgtactcccaaatgggctgctggtgccaaatgc |
447 |
Q |
| |
|
|||||||||||| ||||||||||||||| | | ||||| |||||||||||||||| | | ||||| |||| |||||||| |||| |||| |||||||| |
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|
| T |
34909598 |
agaagataaaatcctaaaaactattgaaatcaccaaatatagaactctgacctccataggttgaggttgtacgcccaaatgtgctgttggtaccaaatgc |
34909697 |
T |
|
| Q |
448 |
agaa |
451 |
Q |
| |
|
|||| |
|
|
| T |
34909698 |
agaa |
34909701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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