View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18598_low_33 (Length: 314)

Name: NF18598_low_33
Description: NF18598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18598_low_33
NF18598_low_33
[»] chr4 (6 HSPs)
chr4 (13-296)||(40613050-40613333)
chr4 (238-288)||(25606246-25606296)
chr4 (125-189)||(55870390-55870454)
chr4 (155-233)||(29263357-29263435)
chr4 (59-105)||(46053588-46053634)
chr4 (147-227)||(30207582-30207662)
[»] chr8 (1 HSPs)
chr8 (139-189)||(29973052-29973102)
[»] chr7 (2 HSPs)
chr7 (139-227)||(24363612-24363700)
chr7 (252-288)||(12110816-12110852)
[»] chr6 (5 HSPs)
chr6 (230-285)||(7351590-7351645)
chr6 (256-288)||(1498093-1498125)
chr6 (199-227)||(2160948-2160976)
chr6 (125-169)||(4325377-4325421)
chr6 (201-233)||(17241257-17241289)
[»] chr3 (5 HSPs)
chr3 (239-293)||(43875570-43875625)
chr3 (254-288)||(28779439-28779473)
chr3 (55-105)||(29094265-29094315)
chr3 (135-180)||(28779323-28779368)
chr3 (230-278)||(24281143-24281191)
[»] chr1 (6 HSPs)
chr1 (147-222)||(29723468-29723543)
chr1 (139-229)||(45205039-45205129)
chr1 (253-286)||(6102272-6102305)
chr1 (145-189)||(8130413-8130457)
chr1 (145-189)||(29007765-29007809)
chr1 (139-171)||(43372026-43372058)
[»] scaffold0286 (1 HSPs)
scaffold0286 (199-227)||(16141-16169)
[»] chr5 (1 HSPs)
chr5 (59-107)||(11457011-11457059)


Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 13 - 296
Target Start/End: Original strand, 40613050 - 40613333
Alignment:
Q  13 aatatagtcaaatcaaataaaatacatttgtttttcctttgattcaataaacagcttaataaagcgctaatagcataaatacttatcatataaattttac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40613050 aatatagtcaaatcaaataaaatacatttgtttttcctttgattcaacaaacagcttaataaagcgctaatagcataaatacttatcatataaattttac 40613149  T
Q  113 ttaaaaacttcatataaaaaatgatgaaatagagtcaaactattttcacataagctatacgttattttcatcagctagcctgccgtgattatggaaataa 212  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40613150 ttaaaaactttatataaaaaatcatgaaatagagtcaaactattttcacataagctatacgttattttcatcagctagcctgccgtgattatggaaataa 40613249  T
Q  213 gttgaaaacaacttaggaacaatcatacaagtgcttaaatcggtagataaactcaaataagtcaattgaaacaaacactaaatc 296  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40613250 gttgaaaacaacttacgaacaatcatacaagtgcttaaatcggtagataaactcaaataagtcaattgaaacaaacactaaatc 40613333  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 288
Target Start/End: Original strand, 25606246 - 25606296
Alignment:
Q  238 tacaagtgcttaaatcggtagataaactcaaataagtcaattgaaacaaac 288  Q
    ||||||| |||| ||| ||||||||||||||||| ||||||||||||||||    
T  25606246 tacaagtacttatatcagtagataaactcaaatacgtcaattgaaacaaac 25606296  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 189
Target Start/End: Complemental strand, 55870454 - 55870390
Alignment:
Q  125 tataaaaaatgatgaaatagagtcaaactattttcacataagctatacgttattttcatcagcta 189  Q
    ||||| ||| ||| ||||| ||||||||| ||||||||||||||||| ||| ||||||| |||||    
T  55870454 tataacaaaagatcaaataaagtcaaactgttttcacataagctataagttgttttcataagcta 55870390  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 233
Target Start/End: Original strand, 29263357 - 29263435
Alignment:
Q  155 ttttcacataagctatacgttattttcatcagctagcctgccgtgattatggaaataagttgaaaacaacttaggaaca 233  Q
    |||||| |||||| ||| ||| ||||||| ||||| ||||| | | || |||||||||| ||||||||||||| |||||    
T  29263357 ttttcaaataagcgataagttgttttcataagctatcctgcagagcttgtggaaataagctgaaaacaacttatgaaca 29263435  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 46053588 - 46053634
Alignment:
Q  59 ataaacagcttaataaagcgctaatagcataaatacttatcatataa 105  Q
    |||||||||||||| ||||||| ||||||| | ||||||||||||||    
T  46053588 ataaacagcttaattaagcgcttatagcatgagtacttatcatataa 46053634  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 227
Target Start/End: Complemental strand, 30207662 - 30207582
Alignment:
Q  147 tcaaactattttcacataagctatacgttattttcatcagctagcctgccgtgattatggaaataagttgaaaacaactta 227  Q
    ||||||| |||||| |||||||||| ||| ||||||| ||||| | |   | ||||||||||||||| |||||||| ||||    
T  30207662 tcaaactgttttcatataagctataagttgttttcataagctaccttagagagattatggaaataagctgaaaacagctta 30207582  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 189
Target Start/End: Original strand, 29973052 - 29973102
Alignment:
Q  139 aaatagagtcaaactattttcacataagctatacgttattttcatcagcta 189  Q
    ||||| ||||||||||||||||||||||||||| ||| ||||||| |||||    
T  29973052 aaataaagtcaaactattttcacataagctataagttgttttcataagcta 29973102  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 227
Target Start/End: Complemental strand, 24363700 - 24363612
Alignment:
Q  139 aaatagagtcaaactattttcacataagctatacgttattttcatcagctagcctgccgtgattatggaaataagttgaaaacaactta 227  Q
    |||||||||||| ||||||||| | | | |||| ||| ||||||| ||||| ||||  | | ||||||||||||| |||||||||||||    
T  24363700 aaatagagtcaatctattttcatacaggttataagttgttttcataagctatcctggagaggttatggaaataagctgaaaacaactta 24363612  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 288
Target Start/End: Original strand, 12110816 - 12110852
Alignment:
Q  252 tcggtagataaactcaaataagtcaattgaaacaaac 288  Q
    |||||| |||| |||||||||||||||||||||||||    
T  12110816 tcggtaaataagctcaaataagtcaattgaaacaaac 12110852  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 285
Target Start/End: Complemental strand, 7351645 - 7351590
Alignment:
Q  230 aacaatcatacaagtgcttaaatcggtagataaactcaaataagtcaattgaaaca 285  Q
    |||||||  |||||||||||  || ||||||||||||||||||||||||| |||||    
T  7351645 aacaatctcacaagtgcttatgtcagtagataaactcaaataagtcaatttaaaca 7351590  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 288
Target Start/End: Original strand, 1498093 - 1498125
Alignment:
Q  256 tagataaactcaaataagtcaattgaaacaaac 288  Q
    ||||||||||||||||||||||| |||||||||    
T  1498093 tagataaactcaaataagtcaatcgaaacaaac 1498125  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 227
Target Start/End: Complemental strand, 2160976 - 2160948
Alignment:
Q  199 gattatggaaataagttgaaaacaactta 227  Q
    |||||||||||||||||||||||||||||    
T  2160976 gattatggaaataagttgaaaacaactta 2160948  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 4325421 - 4325377
Alignment:
Q  125 tataaaaaatgatgaaatagagtcaaactattttcacataagcta 169  Q
    ||||| ||||||| |||||||| ||||||||||||| ||||||||    
T  4325421 tataataaatgataaaatagagacaaactattttcatataagcta 4325377  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 233
Target Start/End: Complemental strand, 17241289 - 17241257
Alignment:
Q  201 ttatggaaataagttgaaaacaacttaggaaca 233  Q
    ||||||||||||||||||||||||||| |||||    
T  17241289 ttatggaaataagttgaaaacaacttatgaaca 17241257  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 43875570 - 43875625
Alignment:
Q  239 acaagtgctta-aatcggtagataaactcaaataagtcaattgaaacaaacactaa 293  Q
    ||||||||||| || | ||||||||||||||||||||||||| |||||||| ||||    
T  43875570 acaagtgcttataaccagtagataaactcaaataagtcaattcaaacaaaccctaa 43875625  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 288
Target Start/End: Original strand, 28779439 - 28779473
Alignment:
Q  254 ggtagataaactcaaataagtcaattgaaacaaac 288  Q
    |||||||||||||||||||||||||| ||||||||    
T  28779439 ggtagataaactcaaataagtcaattcaaacaaac 28779473  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 29094265 - 29094315
Alignment:
Q  55 ttcaataaacagcttaataaagcgctaatagcataaatacttatcatataa 105  Q
    |||| ||||||||||||| || |||| |||||||||| |||||||||||||    
T  29094265 ttcagtaaacagcttaattaaacgcttatagcataaacacttatcatataa 29094315  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 28779323 - 28779368
Alignment:
Q  135 gatgaaatagagtcaaactattttcacataagctatacgttatttt 180  Q
    ||||||||| |||||||||||||||| |||||||||| ||| ||||    
T  28779323 gatgaaataaagtcaaactattttcatataagctataagttgtttt 28779368  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 278
Target Start/End: Original strand, 24281143 - 24281191
Alignment:
Q  230 aacaatcatacaagtgcttaaatcggtagataaactcaaataagtcaat 278  Q
    |||||||| ||||||||||| | | ||||||| ||||||||||||||||    
T  24281143 aacaatcacacaagtgcttataccagtagatagactcaaataagtcaat 24281191  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 29723468 - 29723543
Alignment:
Q  147 tcaaactattttcacataagctatacgttattttcatcagctagcctgccgtgattatggaaataagttgaaaaca 222  Q
    |||||||||||||| ||| |||||| |||  |||||  ||||| ||||| ||| ||||| ||||||||||||||||    
T  29723468 tcaaactattttcatatatgctataagttgctttcacaagctaccctgcagtggttatgtaaataagttgaaaaca 29723543  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 229
Target Start/End: Original strand, 45205039 - 45205129
Alignment:
Q  139 aaatagagtcaaactattttcacataagctatacgttattttcatcagctagcctgccgtgattatggaaataagttgaaaacaacttagg 229  Q
    ||||| ||||||||||||| || |||||||| | ||| ||||||| ||||| | ||  | | | ||||||||||| |||||||||||||||    
T  45205039 aaataaagtcaaactatttccatataagctagaagttgttttcataagctatcatgtagagttcatggaaataagctgaaaacaacttagg 45205129  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 286
Target Start/End: Original strand, 6102272 - 6102305
Alignment:
Q  253 cggtagataaactcaaataagtcaattgaaacaa 286  Q
    ||||||||||||||||||||||||||| ||||||    
T  6102272 cggtagataaactcaaataagtcaatttaaacaa 6102305  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 8130413 - 8130457
Alignment:
Q  145 agtcaaactattttcacataagctatacgttattttcatcagcta 189  Q
    ||||||||| ||||||||||||||||| ||| ||||||| |||||    
T  8130413 agtcaaactgttttcacataagctataagttgttttcataagcta 8130457  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 29007809 - 29007765
Alignment:
Q  145 agtcaaactattttcacataagctatacgttattttcatcagcta 189  Q
    |||||||||||||||| |||||||||| ||| |||||||| ||||    
T  29007809 agtcaaactattttcatataagctataagttgttttcatcggcta 29007765  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 171
Target Start/End: Complemental strand, 43372058 - 43372026
Alignment:
Q  139 aaatagagtcaaactattttcacataagctata 171  Q
    ||||||||||||| |||||||||||||||||||    
T  43372058 aaatagagtcaaattattttcacataagctata 43372026  T

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Target: scaffold0286 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 227
Target Start/End: Original strand, 16141 - 16169
Alignment:
Q  199 gattatggaaataagttgaaaacaactta 227  Q
    |||||||||||||||||||||||||||||    
T  16141 gattatggaaataagttgaaaacaactta 16169  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 11457011 - 11457059
Alignment:
Q  59 ataaacagcttaataaagcgctaatagcataaatacttatcatataaat 107  Q
    |||||||||||||| ||||||| ||||||||| | ||||||||| ||||    
T  11457011 ataaacagcttaatcaagcgcttatagcataagtgcttatcatacaaat 11457059  T

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