View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18598_low_38 (Length: 264)
Name: NF18598_low_38
Description: NF18598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18598_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 40310329 - 40310559
Alignment:
| Q |
16 |
atgcttaacaaattaaaggcattgaatatcaaatgtgagtttgagccatttttcaatccaattccaagtttagagcacttctcttctggaaattttgtat |
115 |
Q |
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| T |
40310329 |
atgcttaacaaattaaaggcattgaatatcaaatgtgagtttgagccatttttcaatccaattccaagtttagagcacttctcttctggaaattttgtat |
40310428 |
T |
|
| Q |
116 |
gttttgagcctataaaagagacttcagatagacttttggaggcactacaaaatcgtaagttctataaaattggattgtatggaaagcgaggctctggtaa |
215 |
Q |
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| T |
40310429 |
gttttgagcctataaaagagacttcagatagacttttggaggcactagaaaatcgtaagttctataaaattggattgtatggaaagcgaggctctggtaa |
40310528 |
T |
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| Q |
216 |
aacaaagttggttaaagcagtggctgagaaa |
246 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
40310529 |
aacaaagttggttaaagcagtggctgagaaa |
40310559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 23 - 246
Target Start/End: Original strand, 40325616 - 40325839
Alignment:
| Q |
23 |
acaaattaaaggcattgaatatcaaatgtgagtttgagccatttttcaatccaattccaagtttagagcacttctcttctggaaattttgtatgttttga |
122 |
Q |
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||||||||||||||||||||||| |||||| || ||| ||||| || ||| |||||||||||||| ||||||||||||| ||||||||| ||||| | |
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| T |
40325616 |
acaaattaaaggcattgaatatccgatgtgaattcaagctattttccagtcctattccaagtttagaacacttctcttctgaaaattttgtgtgtttcgc |
40325715 |
T |
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| Q |
123 |
gcctataaaagagacttcagatagacttttggaggcactacaaaatcgtaagttctataaaattggattgtatggaaagcgaggctctggtaaaacaaag |
222 |
Q |
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| T |
40325716 |
gtctaccaaagaggcttcagatagacttttgcaggcactgcaaagtgataattcatataaaattggattgtatgggaaacgcggctctggtaaaacaaca |
40325815 |
T |
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| Q |
223 |
ttggttaaagcagtggctgagaaa |
246 |
Q |
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|| || |||||||||||||||||| |
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| T |
40325816 |
ttagtgaaagcagtggctgagaaa |
40325839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 40 - 246
Target Start/End: Complemental strand, 40257834 - 40257628
Alignment:
| Q |
40 |
aatatcaaatgtgagtttgagccatttttcaatccaattccaagtttagagcacttctcttctggaaattttgtatgttttgagcctataaaagagactt |
139 |
Q |
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|||| ||| ||||||||||||||||||| | || ||||| |||||||| ||||||||| |||||||||||||| |||||| | | |||| ||| |
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| T |
40257834 |
aataccaattgtgagtttgagccattttctagccctattcctggtttagagtacttctctttcggaaattttgtatgctttgagtccactaaagtagctt |
40257735 |
T |
|
| Q |
140 |
cagatagacttttggaggcactacaaaatcgtaagttctataaaattggattgtatggaaagcgaggctctggtaaaacaaagttggttaaagcagtggc |
239 |
Q |
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| T |
40257734 |
cggatcaacttttggaggcactgcaagacggtaattgctatataattggattatatgggaagaagggctctggtaaaacaaagttggtgaaagcagttgg |
40257635 |
T |
|
| Q |
240 |
tgagaaa |
246 |
Q |
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||||||| |
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| T |
40257634 |
tgagaaa |
40257628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 161
Target Start/End: Complemental strand, 40598508 - 40598384
Alignment:
| Q |
37 |
ttgaatatcaaatgtgagtttgagccatttttcaatccaattccaagtttagagcacttctcttctggaaattttgtatgttttgagcctataaaagaga |
136 |
Q |
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|||||| | ||||| || ||||| ||||||| | |||||||||||||||||||||||||||||| |||||| || | |||||| || ||| | | ||| |
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| T |
40598508 |
ttgaatgtaaaatgcgaatttgatccattttcaactccaattccaagtttagagcacttctcttcaggaaatattttgtgttttaagtctagagataaga |
40598409 |
T |
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| Q |
137 |
cttcagatagacttttggaggcact |
161 |
Q |
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|||||||| | |||| |||||||| |
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| T |
40598408 |
cttcagatcaaattttagaggcact |
40598384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 117 - 235
Target Start/End: Original strand, 40303160 - 40303278
Alignment:
| Q |
117 |
ttttgagcctataaaagagacttcagatagacttttggaggcactacaaaatcgtaagttctataaaattggattgtatggaaagcgaggctctggtaaa |
216 |
Q |
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||||||||||||||||||| |||||||||||||| | | ||||||||| || ||| | | || |||||||||||||| ||| | || | ||||||| |
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| T |
40303160 |
ttttgagcctataaaagaggcttcagatagacttctagcggcactacatgataataattgttttatgattggattgtatgggaagaggggttttggtaaa |
40303259 |
T |
|
| Q |
217 |
acaaagttggttaaagcag |
235 |
Q |
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||||| ||||| ||||||| |
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| T |
40303260 |
acaaatttggtgaaagcag |
40303278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 159
Target Start/End: Original strand, 40277089 - 40277202
Alignment:
| Q |
46 |
aaatgtgagtttgagccatttttcaatccaattccaagtttagagcacttctcttctggaaattttgtatgttttgagcctataaaagagacttcagata |
145 |
Q |
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|||||||| ||||| ||||||| | || ||||||||||||||||||||| ||| ||||||| || | |||||| || ||| | | |||||||||||| |
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| T |
40277089 |
aaatgtgaatttgacccattttcaactcgaattccaagtttagagcacttttctaatggaaatattatgtgttttaagtctagagaggagacttcagatc |
40277188 |
T |
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| Q |
146 |
gacttttggaggca |
159 |
Q |
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|||||| |||||| |
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| T |
40277189 |
aacttttagaggca |
40277202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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