View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18598_low_4 (Length: 661)
Name: NF18598_low_4
Description: NF18598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18598_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-160; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 17 - 352
Target Start/End: Original strand, 31329643 - 31329978
Alignment:
| Q |
17 |
atagttataatctgaatctcaatttattaattaatcggtttggttataaaaggatgatgnnnnnnnttagatcttataaatgagattgtgtatcagattt |
116 |
Q |
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| T |
31329643 |
atagttataatctgaatctcaatttattaattaatcggtttggttataaaaggatgatgaaaaaaattagatcttataaatgagattgtgtatcagattt |
31329742 |
T |
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| Q |
117 |
gtttgnnnnnnnnttgtatttatttatgttctaagatttgtgttgtattatttatatgttctaagatttgtatagtattataatgttataaatctgattt |
216 |
Q |
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| T |
31329743 |
gtttgaaaaaaaattgtatttatttatgttctaagatttgtgttgtattatttatatgttctaagatttgtataatattataatgttataaatctgattt |
31329842 |
T |
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| Q |
217 |
gtttcattttgcagtgattttgattcgactatgctggcttgcattgcattttcatgccccaatctggagtctatggagatctctgtctttgacaccgcaa |
316 |
Q |
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| T |
31329843 |
gtttcattttgcagtgattttgattcgactatgctggcttgcattgcattttcatgccccaatctggagtctatggagatctctgtctttgacaccgcaa |
31329942 |
T |
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| Q |
317 |
ccaatcggatcaatgggtattactcatgctcctctc |
352 |
Q |
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| T |
31329943 |
ccaatcggatcaatgggtattactcatgctcctctc |
31329978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 379 - 643
Target Start/End: Original strand, 31330005 - 31330270
Alignment:
| Q |
379 |
gctgctttgtgtaatgagttttcagttcttgaacatctaactatgcaattaatgttggatctaatttaattttatacaatgtgaaagtgaggcaataaag |
478 |
Q |
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| T |
31330005 |
gctgctttgtgtaatgagttttcagttcttgaacatctaactatgcaattaatgttggatctaatttaattttatacaatgtgaaagtgaggcaataaag |
31330104 |
T |
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| Q |
479 |
ttgtttagttaagacacag-tgactaattatttcttgtatgattcctacatttttagatccgtgtttggcattgttatttggttaaatgttgtttatcgt |
577 |
Q |
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| T |
31330105 |
ttgtttagttaagacacaaatgactaattatttcttgtatgattcctacatttttagatccgtgtttggcattgttatttggttaaatgttgtttatcgt |
31330204 |
T |
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| Q |
578 |
tcaaatgccacgatgtaaatggatggaatcttcatggtgtattgccttattatagattgtaactct |
643 |
Q |
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| T |
31330205 |
tcaaatgccacgatgtaaatggatggaatcttcatggtgtattgccttattatagattgtaactct |
31330270 |
T |
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