View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18598_low_40 (Length: 250)

Name: NF18598_low_40
Description: NF18598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18598_low_40
NF18598_low_40
[»] chr6 (10 HSPs)
chr6 (1-238)||(5883590-5883827)
chr6 (3-238)||(5821156-5821391)
chr6 (11-80)||(5881032-5881101)
chr6 (1-82)||(5889382-5889463)
chr6 (170-223)||(5761614-5761667)
chr6 (1-97)||(5853570-5853666)
chr6 (148-238)||(5889529-5889619)
chr6 (189-223)||(34130819-34130853)
chr6 (189-223)||(34136444-34136478)
chr6 (169-238)||(5853426-5853495)
[»] scaffold0087 (5 HSPs)
scaffold0087 (3-238)||(40604-40836)
scaffold0087 (170-238)||(20199-20267)
scaffold0087 (170-238)||(30547-30615)
scaffold0087 (170-223)||(13180-13233)
scaffold0087 (3-97)||(34701-34795)


Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 5883827 - 5883590
Alignment:
Q  1 cggttaattggttgcaagaaagatcaattgttgttatcaatccaagattttttccatattctctatttgatcctttcaatgcaaattttgccttgtcgct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5883827 cggttaattggttgcaagaaagatcaattgttgttatcaatccaagattttttccatattctctatttgatcctttcaatgcaaattttgccttgtcgct 5883728  T
Q  101 gaagaagccgatttcatgcactatgctctccgtataggaaactgatgatgtgatatagtgaaagcttgttcttggaaacatcaaatttgataaagcaagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  5883727 gaagaagccgatttcatgcactatgctctccgtataggaaactgatgatgtgacatagtgaaagctttttcttggaaacatcaaatttgataaagcaagt 5883628  T
Q  201 atgttactgaagcattgtggtatttcccctgtaatatt 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  5883627 atgttactgaagcattgtggtatttcccctgtaatatt 5883590  T

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Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 3 - 238
Target Start/End: Complemental strand, 5821391 - 5821156
Alignment:
Q  3 gttaattggttgcaagaaagatcaattgttgttatcaatccaagattttttccatattctctatttgatcctttcaatgcaaattttgccttgtcgctga 102  Q
    ||||| |||||||  |||||||| || ||||  ||||||||||||||||||||||||||||| ||||||||||||||||| ||| || | |||||  |||    
T  5821391 gttaagtggttgcttgaaagatcgatagttgccatcaatccaagattttttccatattctctgtttgatcctttcaatgccaatatttctttgtcattga 5821292  T
Q  103 agaagccgatttcatgcactatgctctccgtataggaaactgatgatgtgatatagtgaaagcttgttcttggaaacatcaaatttgataaagcaagtat 202  Q
    || |||| |  |||| |||| |||  ||| |||||  || |    ||| ||||||||| || ||| |||||||| |  ||||||| |||||||||| |||    
T  5821291 aggagccaacgtcatacactttgccatccatatagccaaatccgtatgagatatagtggaaactttttcttggagagttcaaattagataaagcaattat 5821192  T
Q  203 gttactgaagcattgtggtatttcccctgtaatatt 238  Q
    || ||  |||||||||||||||| ||||||||||||    
T  5821191 gtcacctaagcattgtggtattttccctgtaatatt 5821156  T

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Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 5881101 - 5881032
Alignment:
Q  11 gttgcaagaaagatcaattgttgttatcaatccaagattttttccatattctctatttgatcctttcaat 80  Q
    |||||||||||||||||||||||| | |||||| |||||||| |||||||||||||||||||||||||||    
T  5881101 gttgcaagaaagatcaattgttgtcaccaatccgagatttttaccatattctctatttgatcctttcaat 5881032  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 5889382 - 5889463
Alignment:
Q  1 cggttaattggttgcaagaaagatcaattgttgttatcaatccaagattttttccatattctctatttgatcctttcaatgc 82  Q
    ||||||| |||||||  ||||||||||| ||||  ||||||||||||||||||||||||||||| ||||||||||| |||||    
T  5889382 cggttaagtggttgcttgaaagatcaatagttgccatcaatccaagattttttccatattctctgtttgatccttttaatgc 5889463  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 5761667 - 5761614
Alignment:
Q  170 tcttggaaacatcaaatttgataaagcaagtatgttactgaagcattgtggtat 223  Q
    |||||||||| |||||||||||||||||| ||||| ||||||||||| ||||||    
T  5761667 tcttggaaacttcaaatttgataaagcaactatgtgactgaagcattctggtat 5761614  T

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Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 5853666 - 5853570
Alignment:
Q  1 cggttaattggttgcaagaaagatcaattgttgttatcaatccaagattttttccatattctctatttgatcctttcaatgcaaattttgccttgtc 97  Q
    ||||||||||||||||||||||||| ||   | |   |||| ||||| |||||||||||||||| |||||||||||| |||| ||| || |||||||    
T  5853666 cggttaattggttgcaagaaagatcgataaatatcgccaattcaagaatttttccatattctctgtttgatcctttccatgccaatatttccttgtc 5853570  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 148 - 238
Target Start/End: Original strand, 5889529 - 5889619
Alignment:
Q  148 atgtgatatagtgaaagcttgttcttggaaacatcaaatttgataaagcaagtatgttactgaagcattgtggtatttcccctgtaatatt 238  Q
    ||| ||||||||| || ||| |||||||| |  ||||||| |||||||||| ||||| ||  ||||||| ||||||||||||| |||||||    
T  5889529 atgagatatagtggaaactttttcttggagagttcaaattagataaagcaattatgtcacctaagcattatggtatttcccctataatatt 5889619  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 223
Target Start/End: Original strand, 34130819 - 34130853
Alignment:
Q  189 gataaagcaagtatgttactgaagcattgtggtat 223  Q
    |||||||||||| ||||||||||||||||||||||    
T  34130819 gataaagcaagtgtgttactgaagcattgtggtat 34130853  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 223
Target Start/End: Original strand, 34136444 - 34136478
Alignment:
Q  189 gataaagcaagtatgttactgaagcattgtggtat 223  Q
    |||||||||||| ||||||||||||||||||||||    
T  34136444 gataaagcaagtgtgttactgaagcattgtggtat 34136478  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 238
Target Start/End: Complemental strand, 5853495 - 5853426
Alignment:
Q  169 ttcttggaaacatcaaatttgataaagcaagtatgttactgaagcattgtggtatttcccctgtaatatt 238  Q
    ||||||||||| ||||||||| |||||||| ||| | |   |||||||||||||||||||| || |||||    
T  5853495 ttcttggaaacttcaaatttgttaaagcaactatctgatcaaagcattgtggtatttccccggttatatt 5853426  T

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Target: scaffold0087 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 238
Target Start/End: Complemental strand, 40836 - 40604
Alignment:
Q  3 gttaattggttgcaagaaagatcaattgttgttatcaatccaagattttttccatattctctatttgatcctttcaatgcaaattttgccttgtcgctga 102  Q
    ||||| ||||||  ||||||||||||  | || ||||||||||||||||| ||||||||||| |||||||||||| |||| ||| ||||||||||  |||    
T  40836 gttaagtggttgttagaaagatcaatgatcgtcatcaatccaagatttttcccatattctctgtttgatcctttccatgccaatattgccttgtccttga 40737  T
Q  103 agaagccgatttcatgcactatgctctccgtatag-gaaactgatgatgtgatatagtgaaagcttgttcttggaaacatcaaatttgataaagcaagta 201  Q
    || |||| ||||||| || |    || || |  |  |||| ||   ||| | ||| || ||| ||| |||||||||||||||||||||||||||||| ||    
T  40736 aggagccaatttcatacatt----tcaccttcaattgaaaatgtgtatgagctatggtcaaatctttttcttggaaacatcaaatttgataaagcaatta 40641  T
Q  202 tgttactgaagcattgtggtatttcccctgtaatatt 238  Q
    ||| |||||||||||||||||||| ||||||||||||    
T  40640 tgtgactgaagcattgtggtatttgccctgtaatatt 40604  T

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Target: scaffold0087; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 238
Target Start/End: Complemental strand, 20267 - 20199
Alignment:
Q  170 tcttggaaacatcaaatttgataaagcaagtatgttactgaagcattgtggtatttcccctgtaatatt 238  Q
    ||||||| || |||||||||||||||||| ||||| ||||||||||||||||||| |||| || |||||    
T  20267 tcttggagacttcaaatttgataaagcaactatgtgactgaagcattgtggtattcccccagttatatt 20199  T

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Target: scaffold0087; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 238
Target Start/End: Complemental strand, 30615 - 30547
Alignment:
Q  170 tcttggaaacatcaaatttgataaagcaagtatgttactgaagcattgtggtatttcccctgtaatatt 238  Q
    ||||||| || |||||||||||||||||| ||||| ||||||||||||||||||| |||| || |||||    
T  30615 tcttggagacttcaaatttgataaagcaactatgtgactgaagcattgtggtattcccccagttatatt 30547  T

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Target: scaffold0087; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 13233 - 13180
Alignment:
Q  170 tcttggaaacatcaaatttgataaagcaagtatgttactgaagcattgtggtat 223  Q
    |||||||||| |||||||||||||||| | ||||| ||||||||||| ||||||    
T  13233 tcttggaaacttcaaatttgataaagcgactatgtgactgaagcattctggtat 13180  T

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Target: scaffold0087; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 97
Target Start/End: Complemental strand, 34795 - 34701
Alignment:
Q  3 gttaattggttgcaagaaagatcaattgttgttatcaatccaagattttttccatattctctatttgatcctttcaatgcaaattttgccttgtc 97  Q
    ||||| |||||||| |||||||||||  | || | |||||||||| ||||  ||||||| || |||||||||||| |||| ||| || |||||||    
T  34795 gttaagtggttgcacgaaagatcaatgatagtcaccaatccaagaattttatcatattcactgtttgatcctttccatgccaatatttccttgtc 34701  T

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