View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18598_low_42 (Length: 248)
Name: NF18598_low_42
Description: NF18598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18598_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 230
Target Start/End: Complemental strand, 55320883 - 55320666
Alignment:
| Q |
13 |
aatattagcctatttggacaatacaaattattgcagtcattagatgcttttgaaaatctaagatcctgttaaatgtgtaaaataaatagtccacaaaatt |
112 |
Q |
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| T |
55320883 |
aatattagcctatttggacaatacaaattattgcagtcattagatgcttttgaaaatctaagatcctgttaaatgtgtaaaataaatagtccacaaaatt |
55320784 |
T |
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| Q |
113 |
gtcaccttagttagattctattttacttgatatctctttatcaaataatttgttgtcattagaatttaggatacctttggaatatatgttcataatctat |
212 |
Q |
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| T |
55320783 |
gtcactttagtttgattctattttacttgatatctctttatcaaataatttgttgtcattagaatttaggatacctttggaatatatgttcataatctat |
55320684 |
T |
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| Q |
213 |
atgttctttgtatggatt |
230 |
Q |
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|||||||||||||||||| |
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| T |
55320683 |
atgttctttgtatggatt |
55320666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 14 - 230
Target Start/End: Complemental strand, 31951981 - 31951765
Alignment:
| Q |
14 |
atattagcctatttggacaatacaaattattgcagtcattagatgcttttgaaaatctaagatcctgttaaatgtgtaaaataaatagtccacaaaattg |
113 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31951981 |
atattagcctatttggataatacaaattattgcagtcattagatgcttttgaaaatctaagatcctgttaaatgtgtaaaataaatagtccacaaaattg |
31951882 |
T |
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| Q |
114 |
tcaccttagttagattctattttacttgatatctctttatcaaataatttgttgtcattagaatttaggatacctttggaatatatgttcataatctata |
213 |
Q |
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|||| || ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
31951881 |
tcacttttgtttgattctattttacttgatatctctttatcaaataatttgttgtcgttagaatttaggtcacctttgaaatatatgttcataatctata |
31951782 |
T |
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| Q |
214 |
tgttctttgtatggatt |
230 |
Q |
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||||||||||||||||| |
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| T |
31951781 |
tgttctttgtatggatt |
31951765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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