View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18598_low_45 (Length: 237)

Name: NF18598_low_45
Description: NF18598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18598_low_45
NF18598_low_45
[»] chr6 (9 HSPs)
chr6 (1-221)||(5884070-5884290)
chr6 (1-221)||(5853909-5854132)
chr6 (1-221)||(5830968-5831191)
chr6 (1-221)||(5881354-5881574)
chr6 (1-221)||(5821636-5821856)
chr6 (121-221)||(5762189-5762289)
chr6 (121-221)||(5888919-5889019)
chr6 (117-173)||(5163866-5163923)
chr6 (38-74)||(5163799-5163835)
[»] scaffold0087 (5 HSPs)
scaffold0087 (20-221)||(20719-20920)
scaffold0087 (5-221)||(41085-41301)
scaffold0087 (5-221)||(31052-31268)
scaffold0087 (121-221)||(13755-13855)
scaffold0087 (6-221)||(35044-35260)


Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 5884070 - 5884290
Alignment:
Q  1 caaacttttgattcctcttcatatgtggggaataatcgactttgtggacaaccgctcataaatctttgccctggcgatgtcacttctccaactagaagtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5884070 caaacttttgattcctcttcatatgtggggaataatcgactttgtggacaaccgctcataaatctttgccctggcgatgtcacttctccaactagaagtc 5884169  T
Q  101 cagagaaacaactcccagatgaagatgaagataagctcataacctttgggttttatgttagcttagggcttggnnnnnnngttggattttggggagtttg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||       ||||||||||||||||||||    
T  5884170 cagagaaacaactcccagatgaagatgaagataagctcataacctttgggttttatgttaccttagggcttggtttttttgttggattttggggagtttg 5884269  T
Q  201 tggaactctagtgataaaaac 221  Q
    |||||||||||||||||||||    
T  5884270 tggaactctagtgataaaaac 5884290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 5853909 - 5854132
Alignment:
Q  1 caaacttttgattcctcttcatatgtggggaataatcgactttgtggacaaccgctcataaatctttgccctggcgatgtcacttctccaactagaagtt 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||| || | |||||| | |||| |||||||||       
T  5853909 caaacttttgattcctattcatatgtggggaataatcgactttgtggaccaccactcataaatctttgtccagccgatgtgatttcttcaactagaatca 5854008  T
Q  101 cagagaaacaactccc---agatgaagatgaagataagctcataacctttgggttttatgttagcttagggcttggnnnnnnngttggattttggggagt 197  Q
      || |||||  || |    || |||||||||||||||||||||||||||||||||||||||||||| |  |||||        ||||||||||||||||    
T  5854009 atgataaacatgtcactattgaagaagatgaagataagctcataacctttgggttttatgttagcttggtacttggtttcataattggattttggggagt 5854108  T
Q  198 ttgtggaactctagtgataaaaac 221  Q
    |||||||| |||||||||||||||    
T  5854109 ttgtggaagtctagtgataaaaac 5854132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 5830968 - 5831191
Alignment:
Q  1 caaacttttgattcctcttcatatgtggggaataatcgactttgtggacaaccgctcataaatctttgccctggcgatgtcacttctccaactagaagtt 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||| ||  ||||||| | |||| |||||||||       
T  5830968 caaacttttgattcctattcatatgtggggaataatcgactttgtggaccaccactcataaatctttgtccaagcgatgtgatttcttcaactagaacca 5831067  T
Q  101 cagagaaacaactccc---agatgaagatgaagataagctcataacctttgggttttatgttagcttagggcttggnnnnnnngttggattttggggagt 197  Q
      || |||||  || |    || |||||||||||||||||||||||||||||||||||||||||||| |  |||||        ||||||||||||||||    
T  5831068 atgataaacatgtcactagtgaagaagatgaagataagctcataacctttgggttttatgttagcttggtacttggtttcataattggattttggggagt 5831167  T
Q  198 ttgtggaactctagtgataaaaac 221  Q
    |||||||||||| ||||| |||||    
T  5831168 ttgtggaactcttgtgattaaaac 5831191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 5881354 - 5881574
Alignment:
Q  1 caaacttttgattcctcttcatatgtggggaataatcgactttgtggacaaccgctcataaatctttgccctggcgatgtcacttctccaactagaagtt 100  Q
    ||||||||| || ||||| ||||||||||||| | | ||||||||||||| || |||||||||||||| ||||||||||| | ||||||||| | |||      
T  5881354 caaacttttcatccctctgcatatgtggggaacagtggactttgtggacagccactcataaatctttgtcctggcgatgtgatttctccaacaaaaagcc 5881453  T
Q  101 cagagaaacaactcccagatgaagatgaagataagctcataacctttgggttttatgttagcttagggcttggnnnnnnngttggattttggggagtttg 200  Q
      || |||||   | | | ||||||||||||||||||||||||| ||||||||||||||||||| | | ||||       ||||| ||||||||||||||    
T  5881454 atgataaacatgccactggtgaagatgaagataagctcataaccattgggttttatgttagcttggtgattggtttttttgttggcttttggggagtttg 5881553  T
Q  201 tggaactctagtgataaaaac 221  Q
    ||||||||| |||||||||||    
T  5881554 tggaactcttgtgataaaaac 5881574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 5821636 - 5821856
Alignment:
Q  1 caaacttttgattcctcttcatatgtggggaataatcgactttgtggacaaccgctcataaatctttgccctggcgatgtcacttctccaactagaagtt 100  Q
    |||||||||||| | ||||||||||||||||| | |||||||||||| | ||| |||||||| |||| ||||| |||||| | |||||||||||| ||      
T  5821636 caaacttttgatccatcttcatatgtggggaacagtcgactttgtggcccaccactcataaaccttttccctgacgatgtaatttctccaactagtagca 5821735  T
Q  101 cagagaaacaactcccagatgaagatgaagataagctcataacctttgggttttatgttagcttagggcttggnnnnnnngttggattttggggagtttg 200  Q
      || |||||  || ||  |||||| || |||||||| ||||| |||||||||||||||||||| | | ||||       ||||||||||||||||||||    
T  5821736 atgacaaacatgtcacaagtgaagaagaggataagctaataacatttgggttttatgttagcttggtgattggtttttttgttggattttggggagtttg 5821835  T
Q  201 tggaactctagtgataaaaac 221  Q
    ||||||||| |||||||||||    
T  5821836 tggaactcttgtgataaaaac 5821856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 121 - 221
Target Start/End: Original strand, 5762189 - 5762289
Alignment:
Q  121 gaagatgaagataagctcataacctttgggttttatgttagcttagggcttggnnnnnnngttggattttggggagtttgtggaactctagtgataaaaa 220  Q
    |||||||||||||||||||||||||||||||||||||||||||| | | ||||        |||||||||||||||||||||||||||||||||||||||    
T  5762189 gaagatgaagataagctcataacctttgggttttatgttagcttggtgattggttttttcattggattttggggagtttgtggaactctagtgataaaaa 5762288  T
Q  221 c 221  Q
    |    
T  5762289 c 5762289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 121 - 221
Target Start/End: Complemental strand, 5889019 - 5888919
Alignment:
Q  121 gaagatgaagataagctcataacctttgggttttatgttagcttagggcttggnnnnnnngttggattttggggagtttgtggaactctagtgataaaaa 220  Q
    |||||||||||||| ||||||||||||||||||||||||| ||| |  |||||        |||||||||||||||||||||||||||| ||||| ||||    
T  5889019 gaagatgaagataaactcataacctttgggttttatgttaccttggtacttggtttcataattggattttggggagtttgtggaactcttgtgattaaaa 5888920  T
Q  221 c 221  Q
    |    
T  5888919 c 5888919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 117 - 173
Target Start/End: Original strand, 5163866 - 5163923
Alignment:
Q  117 agatgaaga-tgaagataagctcataacctttgggttttatgttagcttagggcttgg 173  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  5163866 agatgaagaatgaagataagctcataaccattgggttttatgttagcttagggcttgg 5163923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 5163799 - 5163835
Alignment:
Q  38 gactttgtggacaaccgctcataaatctttgccctgg 74  Q
    ||||||||||||| || ||||||||||||||||||||    
T  5163799 gactttgtggacagccactcataaatctttgccctgg 5163835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 81; Significance: 3e-38; HSPs: 5)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 20719 - 20920
Alignment:
Q  20 catatgtggggaataatcgactttgtggacaaccgctcataaatctttgccctggcgatgtcacttctccaactagaagttcagagaaacaactcccaga 119  Q
    |||||| ||||||||||||||| ||||||| ||| |||||||||||||| || | |||||| | |||||||| |||||| |  || |||    || |       
T  20719 catatgcggggaataatcgactatgtggaccaccactcataaatctttgtccagacgatgtgatttctccaaatagaagctatgataaaactgtcactag 20818  T
Q  120 tgaagatgaagataagctcataacctttgggttttatgttagcttagggcttggnnnnnnngttggattttggggagtttgtggaactctagtgataaaa 219  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||        ||||||||||||||||||||||||||||||||||||||    
T  20819 tgaagatgaagataagctaataacctttgggttttatgttagcttggggcttggatttctaattggattttggggagtttgtggaactctagtgataaaa 20918  T
Q  220 ac 221  Q
    ||    
T  20919 ac 20920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 5 - 221
Target Start/End: Original strand, 41085 - 41301
Alignment:
Q  5 cttttgattcctcttcatatgtggggaataatcgactttgtggacaaccgctcataaatctttgccctggcgatgtcacttctccaactagaagttcaga 104  Q
    |||||||| ||||| ||||||| ||||| | | ||||||||||||| || |||||||||||||| ||| ||||||| | ||||||||| | |||    ||    
T  41085 cttttgatccctctacatatgtcgggaacagtggactttgtggacagccactcataaatctttgtcctagcgatgtaatttctccaacaaaaagccatga 41184  T
Q  105 gaaacaactcccagatgaagatgaagataagctcataacctttgggttttatgttagcttagggcttggnnnnnnngttggattttggggagtttgtgga 204  Q
     |||||   | |   ||||||||||||||||||||||||| ||||||||||||||||||| | | ||||       ||||||||||||||||||||||||    
T  41185 taaacatgccactagtgaagatgaagataagctcataaccattgggttttatgttagcttggtgattggtttttttgttggattttggggagtttgtgga 41284  T
Q  205 actctagtgataaaaac 221  Q
    |||||||||||||||||    
T  41285 actctagtgataaaaac 41301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 5 - 221
Target Start/End: Original strand, 31052 - 31268
Alignment:
Q  5 cttttgattcctcttcatatgtggggaataatcgactttgtggacaaccgctcataaatctttgccctggcgatgtcacttctccaactagaagttcaga 104  Q
    |||||||| | ||| |||||  ||||||||||||||| ||||||| ||| |||||||||||||| || | |||||| | |||||||| || ||| |  ||    
T  31052 cttttgatccatctacatatacggggaataatcgactatgtggaccaccactcataaatctttgtccagacgatgtgatttctccaaataaaagctatga 31151  T
Q  105 gaaacaactcccagatgaagatgaagataagctcataacctttgggttttatgttagcttagggcttggnnnnnnngttggattttggggagtttgtgga 204  Q
     |||    || |   |||||||||||||||||| |||||||||||||||||||||||||| ||||||||        |||||||||||||||||||||||    
T  31152 taaaactgtcactagtgaagatgaagataagctaataacctttgggttttatgttagcttggggcttggatttataattggattttggggagtttgtgga 31251  T
Q  205 actctagtgataaaaac 221  Q
    ||||||||| |||||||    
T  31252 actctagtgctaaaaac 31268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 121 - 221
Target Start/End: Original strand, 13755 - 13855
Alignment:
Q  121 gaagatgaagataagctcataacctttgggttttatgttagcttagggcttggnnnnnnngttggattttggggagtttgtggaactctagtgataaaaa 220  Q
    |||||||||||||||||||||||||||||||||||||||||||| | | ||||        |||||||||||||||||||||||||||||||||||||||    
T  13755 gaagatgaagataagctcataacctttgggttttatgttagcttggtgattggttttttcattggattttggggagtttgtggaactctagtgataaaaa 13854  T
Q  221 c 221  Q
    |    
T  13855 c 13855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 221
Target Start/End: Original strand, 35044 - 35260
Alignment:
Q  6 ttttgattcctcttcatatgtggggaataatcgactttgtggacaaccgctcataaatctttgccctggcgatgtcacttctccaactagaagttcagag 105  Q
    ||||||||||| |||||||||||||||||||||||||||||||    |  ||||||||||||| ||  | ||||| | |||| |||||||||     ||     
T  35044 ttttgattcctattcatatgtggggaataatcgactttgtggattgac--tcataaatctttgtccaagtgatgtgatttcttcaactagaaccaatgat 35141  T
Q  106 aaacaactccca---gatgaagatgaagataagctcataacctttgggttttatgttagcttagggcttggnnnnnnngttggattttggggagtttgtg 202  Q
    |||||  || |    || ||||||||||||||||||||||| |||||||||||||||||||| |  |||||        |||||||||||||||||||||    
T  35142 aaacatgtcactagtgaagaagatgaagataagctcataacatttgggttttatgttagcttggtacttggtttcataattggattttggggagtttgtg 35241  T
Q  203 gaactctagtgataaaaac 221  Q
    ||||||| ||||| |||||    
T  35242 gaactcttgtgattaaaac 35260  T

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