View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18598_low_6 (Length: 625)
Name: NF18598_low_6
Description: NF18598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18598_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 519; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 49 - 607
Target Start/End: Complemental strand, 30690430 - 30689871
Alignment:
| Q |
49 |
atatatat-tattatatagtaacataagcttattagatcttgcctnnnnnnntattaagcatattagatctagattctcttaacctgttttgggacaaaa |
147 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30690430 |
atatatatatattatatagtaacataagcttattagatcttgcctaaaaaaatattaagcatattagatctagattctcttaacctgttttgggacaaaa |
30690331 |
T |
|
| Q |
148 |
actatgtttcttattagcactaaactctctaaactaatagataatattatttttctggctacattagaataatccaaatccatatccataattgaataca |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30690330 |
actatgtttcttattagcactaaactctctaaactaatagataatattatttttctggctacattagaataatccaaatccatatccataattgaataca |
30690231 |
T |
|
| Q |
248 |
acctgcagtggggttaccataatttgaggcaaatatatatattaatttcgatacaacctgcagtggggtttgaccaataatttgaaggggaagacaccaa |
347 |
Q |
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| T |
30690230 |
acctgcagtggggttaccataatttgaggcaaatatatatattaatttcgatacaacctgcagtggggtttgaccaataatttgaaggggaagacaccaa |
30690131 |
T |
|
| Q |
348 |
aaaacattaacagaaactatgactcataggagttgtccctctttgttccacaacccagatatggaaatgctgcaaggcccttcagaaatttcctttgaat |
447 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
30690130 |
aaaacattaacagaaactatgactcataggagttgtccctctttgttccacaacccagatatggaaatgcagcaaggcccttcagaaatttcctttgaat |
30690031 |
T |
|
| Q |
448 |
tatttgatattaatcatgattttctttcctttgatatggttgatttctcatcgagttcgcagacaccaattaccgaaaacgagccaaaacaattgatgtt |
547 |
Q |
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| T |
30690030 |
tatttgatattaatcatgattttctttcctttgatatggttgatttctcatcgagttcgcagacaccaattaccaaaaacgagccaaaacaattgatgtt |
30689931 |
T |
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| Q |
548 |
gaagtcatcatcatctgaagcaaaagaagtgttgcagaataatactaagatggatcaaaa |
607 |
Q |
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| T |
30689930 |
gaagtcatcatcatctgaagcaaacgaagtgttgcagaataatactaagatggatcaaaa |
30689871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 331 - 607
Target Start/End: Complemental strand, 30672252 - 30671976
Alignment:
| Q |
331 |
gaaggggaagacaccaaaaaacattaacagaaactatgactcataggagttgtccctctttgttccacaacccagatatggaaatgctgcaaggcccttc |
430 |
Q |
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| T |
30672252 |
gaagggcaagacagcaagaagcattaacagaaaccatgccttataggatgagttcctctttgttccacaacccagatatggaaatgctgcaaagcccttc |
30672153 |
T |
|
| Q |
431 |
agaaatttcctttgaattatttgatattaatcatgattttctttcctttgatatggttgatttctcatcgagttcgcagacaccaattaccgaaaacgag |
530 |
Q |
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| T |
30672152 |
tgaaatttcctttgaatcatttggtattaatcatgattttctttcctttgatatggttgatttctcatcgagttcgcagacaccagttaccgaaaacgag |
30672053 |
T |
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| Q |
531 |
ccaaaacaattgatgttgaagtcatcatcatctgaagcaaaagaagtgttgcagaataatactaagatggatcaaaa |
607 |
Q |
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| T |
30672052 |
ccaaaacaattgatgttgaagtcatcatcatctgaagcaaaagaagtgttgcagaataataataagatgaatcaaaa |
30671976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 403 - 556
Target Start/End: Complemental strand, 30710835 - 30710682
Alignment:
| Q |
403 |
cagatatggaaatgctgcaag---gcccttcagaaatttcctttgaattatttgatattaatcatgattttctttcctttgatatggttgatttctcatc |
499 |
Q |
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|||||||||||||||||||| ||||||| |||||| |||| |||| ||| | |||| ||||||| |||| ||||||||||||||||||||||||| |
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| T |
30710835 |
cagatatggaaatgctgcaacaaagcccttcggaaattcccttcgaatcattaggtatt---catgattgtcttacctttgatatggttgatttctcatc |
30710739 |
T |
|
| Q |
500 |
gagttcgcagacaccaattaccgaaaacgagccaaaacaattgatgttgaagtcatc |
556 |
Q |
| |
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| T |
30710738 |
gagtttgcagacaataattaacgaaaacgagccaaaacaatcaatgttgaagtcatc |
30710682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 111 - 229
Target Start/End: Complemental strand, 30672436 - 30672313
Alignment:
| Q |
111 |
ttagatctagattctcttaacctgttttgggacaaaaactatgtttcttattagcactaaactctctaaac---taatagataa---tattatttttctg |
204 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||| ||| | |||||||||||| | ||||| ||| ||||| |||| ||||||||||||| |
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| T |
30672436 |
ttagatctagattctcttaac-tgttttgggacaaaaacagtgtgttttattagcactagattctcttaactaataataaataatgttattatttttctg |
30672338 |
T |
|
| Q |
205 |
gctacattagaataatccaaatcca |
229 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
30672337 |
gctacattagaataatccaaatcca |
30672313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 30690500 - 30690451
Alignment:
| Q |
10 |
gaagaatatgaaaaggtaaaggggttcatgacaaagcacatatatattat |
59 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30690500 |
gaagaaaatgaaaaggtaaaggggttcatgacaaagcacatatatattat |
30690451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 386 - 439
Target Start/End: Complemental strand, 30657021 - 30656968
Alignment:
| Q |
386 |
ctctttgttccacaacccagatatggaaatgctgcaaggcccttcagaaatttc |
439 |
Q |
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| T |
30657021 |
ctcttttttccagaacccaaatacggaaatgctgcaagacccttcagaaatttc |
30656968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 10 - 44
Target Start/End: Complemental strand, 30672765 - 30672731
Alignment:
| Q |
10 |
gaagaatatgaaaaggtaaaggggttcatgacaaa |
44 |
Q |
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|||||| |||||||||||||||||||||||||||| |
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| T |
30672765 |
gaagaagatgaaaaggtaaaggggttcatgacaaa |
30672731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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