View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18598_low_7 (Length: 599)
Name: NF18598_low_7
Description: NF18598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18598_low_7 |
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| [»] scaffold0085 (2 HSPs) |
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Alignment Details
Target: scaffold0085 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: scaffold0085
Description:
Target: scaffold0085; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 45551 - 45949
Alignment:
| Q |
1 |
aaaatgaaaagcgcatcaaatacttaaaaattcaaatgccacggtattaaaaagtaagcaaataataaaacctaatatattaacacaaaaagaaaagtac |
100 |
Q |
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| T |
45551 |
aaaatgaaaagcgcatcaaatacttaaaaattcaaatgccacggtattaaaaagtaagcaaataataaaacctaatatattaacacaaaaagaaaagtac |
45650 |
T |
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| Q |
101 |
taattaatcaatttaaccgatcaaatggttggtttaacgctgttccattccgtttcattcaaataatatctatgaagcactgacacagagacaccaaaca |
200 |
Q |
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| T |
45651 |
taattaatcaatttaaccgatcaaatggttggtttaacgctgttccattccgtttcattcaaataatatctatgaagcactgacacagagacaccaaaca |
45750 |
T |
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| Q |
201 |
caacagtgacacatagtgacacatcgagaccgataataatttnnnnnnntagcataataaaatgtaattatacctgtcagtgttgtgttgatgttagaca |
300 |
Q |
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| T |
45751 |
caacagtgacacatagtgacacatcgagaccgataataatttaaaaaaatagcataataaaatgtaattatacctgtcagtgttgtgttgatgttagaca |
45850 |
T |
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| Q |
301 |
ctaacagatgtcaaataccagacatgacttcattagaagttttggtgctctaaaggatgctataaatgtaattaacaaatcataataatcaatgatata |
399 |
Q |
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| T |
45851 |
ctaacagatgtcaaataccagacatgacttcattagaagttttggtgctctaaaggatgctataaatgtaattaacaaatcataataatcaatgatata |
45949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0085; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 369 - 599
Target Start/End: Original strand, 46007 - 46237
Alignment:
| Q |
369 |
taattaacaaatcataataatcaatgatataagttaaactatgaagatgaaatgcgaagtgaataattctaaccagcgacagttacaaatccaacagtgt |
468 |
Q |
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| T |
46007 |
taattaacaaatcataataatcaatgatataagttaaactatgaagatgaaatgcgaagtgaataattctaaccagcgacagttacaaatccaacagtgt |
46106 |
T |
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| Q |
469 |
cgaactgcaaaacgccacagatttcgatcaattcagcttccttagttgcaaaatgattctccatctcttcgcatttgacgatgctggattcgatctcgcg |
568 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
46107 |
cgaactgcaaaacgccacagattccgatcaattcagcttccttagttgcaaaatgattctccatctcttcgcatctgacgatgctggattcgatctcgcg |
46206 |
T |
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| Q |
569 |
tgtgacctgaatatgagcttcgatttcttcg |
599 |
Q |
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| T |
46207 |
tgtgacctgaatatgagcttcgatttcttcg |
46237 |
T |
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